Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : YND

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 34


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 5.369 -2.232 1.156
2 N N N1 N Y N 0 1.495 1.014 -1.102
3 CA C C2 N N N 0 0.177 0.756 -1.688
4 C C C3 N N N 0 -0.859 0.717 -0.595
5 O O O1 N N N 0 -0.53 0.887 0.56
6 CAD C C4 N Y N 0 -3.939 0.956 2.278
7 CAE C C5 N Y N 0 -2.983 1.106 1.296
8 CAF C C6 N Y N 0 3.279 2.131 -0.401
9 CAG C C7 N Y N 0 2.075 2.25 -0.988
10 CAH C C8 N N N 0 3.186 -1.969 0.092
11 CAI C C9 N Y N 0 -5.095 -0.593 1.018
12 CAP C C10 N Y N 0 -4.187 -0.493 -0.016
13 CAQ C C11 N Y N 0 -3.099 0.369 0.118
14 CAR C C12 N N N 0 4.509 -0.06 0.452
15 CAS C C13 N Y N 0 3.474 0.71 -0.129
16 CAT C C14 N Y N 0 2.321 0.059 -0.586
17 NAK N N2 N Y N 0 -4.952 0.125 2.116
18 NAL N N3 N N N 0 2.227 -1.274 -0.452
19 NAM N N4 N N N 0 -2.152 0.493 -0.9
20 NAN N N5 N N N 0 4.327 -1.397 0.553
21 OAB O O2 N N N 0 5.528 0.467 0.863
22 CLAC CL CL1 N N N 0 -4.384 -1.444 -1.456
23 H1 H H1 N N N 0 5.051 -3.274 1.145
24 H2 H H2 N N N 0 6.293 -2.128 0.587
25 H3 H H3 N N N 0 5.539 -1.914 2.185
26 HA2 H H4 N N N 0 -0.068 1.551 -2.393
27 HA1 H H5 N N N 0 0.192 -0.201 -2.209
28 HAD H H6 N N N 0 -3.856 1.523 3.194
29 HAE H H7 N N N 0 -2.155 1.785 1.437
30 HAF H H8 N N N 0 3.97 2.931 -0.179
31 HAG H H9 N N N 0 1.633 3.178 -1.319
32 HAH H H10 N N N 0 3.068 -3.039 0.179
33 HAI H H11 N N N 0 -5.938 -1.262 0.925
34 HNA H H12 N N N 0 -2.425 0.417 -1.828