Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : YR2

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 60


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C02 C C1 R N N 0 -4.726 -0.798 0.321
2 C03 C C2 N Y N 0 -6.112 -0.548 0.888
3 C04 C C3 N Y N 0 -6.76 0.315 0.013
4 C06 C C4 N N N 0 -4.607 0.325 -0.728
5 C07 C C5 N N N 0 -3.852 -0.176 -1.954
6 C08 C C6 N N N 0 -2.402 -0.48 -1.567
7 C10 C C7 N Y N 0 -0.422 0.534 -0.793
8 C11 C C8 N Y N 0 0.356 1.577 -0.277
9 C14 C C9 N Y N 0 1.426 -0.825 -0.856
10 C15 C C10 N Y N 0 2.206 0.228 -0.337
11 C16 C C11 N Y N 0 3.57 -0.292 -0.222
12 C18 C C12 N N N 0 4.587 1.842 0.563
13 C19 C C13 N N N 0 5.825 2.533 -0.022
14 C20 C C14 N N N 0 7.072 1.984 0.671
15 C21 C C15 N Y N 0 7.077 0.478 0.632
16 C22 C C16 N Y N 0 5.908 -0.24 0.431
17 C23 C C17 N Y N 0 5.954 -1.632 0.406
18 C24 C C18 N Y N 0 7.179 -2.254 0.584
19 C25 C C19 N Y N 0 8.304 -1.474 0.778
20 C29 C C20 N N N 0 -2.457 1.178 0.202
21 C30 C C21 N N N 0 -3.91 1.538 -0.124
22 C31 C C22 N Y N 0 -8.059 0.721 0.309
23 C32 C C23 N Y N 0 -8.687 0.265 1.449
24 C33 C C24 N Y N 0 -8.033 -0.6 2.308
25 C34 C C25 N Y N 0 -6.742 -1.005 2.024
26 N01 N N1 N N N 0 -4.649 -2.12 -0.314
27 N09 N N2 N N N 0 -1.778 0.732 -1.021
28 N12 N N3 N Y N 0 1.642 1.402 -0.063
29 N13 N N4 N Y N 0 0.127 -0.638 -1.07
30 N17 N N5 N N N 0 4.683 0.409 0.25
31 N26 N N6 N Y N 0 8.225 -0.16 0.796
32 N27 N N7 N Y N 0 3.558 -1.53 -0.64
33 N28 N N8 N Y N 0 2.266 -1.89 -1.035
34 O05 O O1 N N N 0 -5.969 0.626 -1.052
35 H021 H H1 N N N 0 -3.964 -0.693 1.093
36 H072 H H2 N N N 0 -4.327 -1.084 -2.327
37 H071 H H3 N N N 0 -3.87 0.589 -2.73
38 H081 H H4 N N N 0 -2.384 -1.268 -0.814
39 H082 H H5 N N N 0 -1.851 -0.807 -2.449
40 H111 H H6 N N N 0 -0.102 2.529 -0.055
41 H182 H H7 N N N 0 4.561 1.982 1.644
42 H181 H H8 N N N 0 3.685 2.259 0.115
43 H191 H H9 N N N 0 5.884 2.333 -1.092
44 H192 H H10 N N N 0 5.756 3.608 0.145
45 H201 H H11 N N N 0 7.961 2.36 0.164
46 H202 H H12 N N N 0 7.083 2.315 1.709
47 H231 H H13 N N N 0 5.056 -2.213 0.253
48 H241 H H14 N N N 0 7.254 -3.331 0.572
49 H251 H H15 N N N 0 9.264 -1.951 0.916
50 H291 H H16 N N N 0 -1.947 2.054 0.602
51 H292 H H17 N N N 0 -2.439 0.377 0.941
52 H301 H H18 N N N 0 -3.929 2.362 -0.839
53 H302 H H19 N N N 0 -4.424 1.837 0.789
54 H311 H H20 N N N 0 -8.576 1.397 -0.356
55 H321 H H21 N N N 0 -9.694 0.584 1.672
56 H331 H H22 N N N 0 -8.53 -0.957 3.199
57 H341 H H23 N N N 0 -6.227 -1.68 2.693
58 H012 H H24 N N N 0 -4.777 -2.856 0.365
59 H011 H H25 N N N 0 -5.318 -2.201 -1.065
60 H281 H H27 N N N 0 2.006 -2.758 -1.382