Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : YS4

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 46


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O5 O O5 N N N 0 -5.261 -0.53 -0.089
2 P2 P P2 N N N 0 -4.226 -0.902 0.902
3 O6 O O6 N N N 0 -4.596 -0.262 2.332
4 O7 O O7 N N N 0 -4.16 -2.505 1.033
5 C13 C C13 N N N 0 -2.606 -0.27 0.354
6 P1 P P1 N N N 0 -2.186 -0.995 -1.265
7 O3 O O3 N N N 0 -0.755 -0.436 -1.748
8 O2 O O2 N N N 0 -2.12 -2.598 -1.134
9 O4 O O4 N N N 0 -3.221 -0.623 -2.255
10 N1 N N1 N N N 0 -2.666 1.189 0.235
11 C12 C C12 N Y N 0 -1.492 1.928 0.139
12 C11 C C11 N Y N 0 -0.266 1.275 0.156
13 N2 N N2 N Y N 0 -1.555 3.246 0.026
14 C14 C C14 N Y N 0 -0.469 3.991 -0.069
15 C15 C C15 N Y N 0 0.786 3.421 -0.055
16 C10 C C10 N Y N 0 0.902 2.031 0.058
17 C9 C C9 N Y N 0 2.234 1.378 0.078
18 C6 C C6 N Y N 0 2.331 -0.009 0.186
19 C5 C C5 N Y N 0 3.57 -0.613 0.203
20 C8 C C8 N Y N 0 3.391 2.149 -0.016
21 C7 C C7 N Y N 0 4.628 1.54 0.002
22 C4 C C4 N Y N 0 4.721 0.159 0.115
23 O1 O O1 N N N 0 5.941 -0.439 0.133
24 C2 C C2 N N N 0 5.963 -1.868 0.125
25 C1 C C1 N N N 0 7.291 -2.353 -0.461
26 C3 C C3 N N N 0 5.817 -2.388 1.556
27 H1 H H1 N N N 0 -3.96 -0.465 3.03
28 H2 H H2 N N N 0 -4.989 -2.911 1.321
29 H3 H H3 N N N 0 -1.844 -0.544 1.084
30 H4 H H4 N N N 0 -0.722 0.525 -1.849
31 H5 H H5 N N N 0 -2.949 -3.004 -0.846
32 H6 H H6 N N N 0 -3.525 1.64 0.223
33 H7 H H7 N N N 0 -0.219 0.2 0.245
34 H8 H H8 N N N 0 -0.565 5.063 -0.16
35 H9 H H9 N N N 0 1.668 4.039 -0.133
36 H10 H H10 N N N 0 1.436 -0.609 0.255
37 H11 H H11 N N N 0 3.646 -1.687 0.287
38 H12 H H12 N N N 0 3.319 3.223 -0.104
39 H13 H H13 N N N 0 5.525 2.137 -0.071
40 H14 H H14 N N N 0 5.139 -2.24 -0.483
41 H15 H H15 N N N 0 8.115 -1.981 0.147
42 H16 H H16 N N N 0 7.308 -3.443 -0.468
43 H17 H H17 N N N 0 7.395 -1.982 -1.481
44 H18 H H18 N N N 0 5.834 -3.478 1.55
45 H19 H H19 N N N 0 6.641 -2.016 2.164
46 H20 H H20 N N N 0 4.872 -2.043 1.974