Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : YU8

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 65


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C12 C C1 N Y N 0 -5.055 -0.522 0.099
2 C26 C C2 N Y N 0 1.281 -1.574 -0.8
3 C28 C C3 N N N 0 4.795 0.234 -0.62
4 C29 C C4 N N N 0 5.314 0.848 0.684
5 O35 O O1 N N N 0 5.089 -0.167 1.692
6 C01 C C5 N N N 0 4.593 -3.362 -1.093
7 C05 C C9 N Y N 0 0.862 -3.972 0.542
8 C02 C C6 S N N 0 3.72 -2.105 -1.088
9 C03 C C7 N Y N 0 2.342 -2.453 -0.589
10 C04 C C8 N Y N 0 2.127 -3.639 0.076
11 C06 C C10 N Y N 0 -0.193 -3.126 0.346
12 C07 C C11 N Y N 0 0.001 -1.917 -0.326
13 C08 C C12 N Y N 0 -0.889 -0.81 -0.694
14 C09 C C13 N Y N 0 -2.339 -0.71 -0.417
15 C10 C C14 N Y N 0 -3.255 -0.705 -1.47
16 C11 C C15 N Y N 0 -4.606 -0.612 -1.206
17 C13 C C16 N N N 0 -6.532 -0.427 0.38
18 C15 C C17 N N N 0 -8.806 1.194 0.762
19 C20 C C19 N Y N 0 -2.796 -0.619 0.898
20 C18 C C18 N Y N 0 -4.152 -0.526 1.15
21 C31 C C23 N N N 0 6.049 2.783 0.293
22 C21 C C20 N Y N 0 -0.106 0.118 -1.357
23 C22 C C21 N N N 0 -0.579 1.391 -1.908
24 C30 C C22 N N N 0 4.796 2.248 1.008
25 C32 C C24 N N N 0 6.693 3.979 0.998
26 C34 C C25 N N N 0 6.722 1.439 0.623
27 C36 C C26 N N N 0 4.523 -1.237 1.115
28 F19 F F1 N N N 0 -4.597 -0.439 2.423
29 N25 N N1 N Y N 0 1.192 -0.345 -1.411
30 N27 N N2 N N N 0 4.319 -1.099 -0.208
31 N33 N N3 N N N 0 7.802 4.49 0.182
32 O16 O O2 N N N 0 -6.396 1.946 1.522
33 O17 O O3 N N N 0 -6.858 1.864 -0.884
34 O23 O O4 N N N 0 -1.749 1.704 -1.8
35 O24 O O5 N N N 0 0.285 2.216 -2.536
36 O37 O O6 N N N 0 4.223 -2.241 1.73
37 S14 S S1 N N N 0 -7.029 1.318 0.416
38 H282 H H1 N N N 0 3.974 0.827 -1.025
39 H281 H H2 N N N 0 5.599 0.145 -1.35
40 H011 H H3 N N N 0 4.662 -3.76 -0.08
41 H012 H H4 N N N 0 4.148 -4.111 -1.748
42 H013 H H5 N N N 0 5.59 -3.111 -1.454
43 H021 H H6 N N N 0 3.651 -1.707 -2.1
44 H041 H H7 N N N 0 2.951 -4.318 0.237
45 H051 H H8 N N N 0 0.711 -4.906 1.062
46 H061 H H9 N N N 0 -1.175 -3.392 0.711
47 H101 H H10 N N N 0 -2.907 -0.775 -2.49
48 H111 H H11 N N N 0 -5.315 -0.609 -2.021
49 H131 H H12 N N N 0 -7.085 -0.946 -0.403
50 H132 H H13 N N N 0 -6.75 -0.887 1.344
51 H151 H H14 N N N 0 -9.292 0.627 -0.032
52 H153 H H15 N N N 0 -8.956 0.687 1.715
53 H152 H H16 N N N 0 -9.237 2.194 0.811
54 H201 H H17 N N N 0 -2.092 -0.622 1.717
55 H301 H H18 N N N 0 3.863 2.498 0.502
56 H302 H H19 N N N 0 4.771 2.47 2.075
57 H311 H H20 N N N 0 5.905 2.95 -0.775
58 H322 H H21 N N N 0 5.949 4.765 1.132
59 H321 H H22 N N N 0 7.071 3.667 1.971
60 H342 H H23 N N N 0 7.24 1.433 1.582
61 H341 H H24 N N N 0 7.328 1.041 -0.191
62 H251 H H25 N N N 0 1.933 0.124 -1.824
63 H1 H H26 N N N 0 7.489 4.726 -0.748
64 H332 H H27 N N N 0 8.244 5.28 0.626
65 H2 H H29 N N N 0 -0.119 3.031 -2.866