Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : YZ0

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 27


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 R N N 0 1.271 0.463 0.469
2 C1M C C1M N N N 0 3.561 -0.242 0.396
3 C2 C C2 S N N 0 0.353 1.635 0.116
4 C3 C C3 S N N 0 -1.078 1.302 0.55
5 C4 C C4 S N N 0 -1.514 -0.002 -0.125
6 C5 C C5 R N N 0 -0.523 -1.111 0.238
7 C6 C C6 N N N 0 -0.918 -2.403 -0.481
8 O1 O O1 N N N 0 2.598 0.743 0.017
9 O2 O O2 N N N 0 0.384 1.857 -1.296
10 O3 O O3 N N N 0 -1.955 2.36 0.158
11 O4 O O4 N N N 0 -2.821 -0.36 0.328
12 O5 O O5 N N N 0 0.792 -0.725 -0.165
13 O6 O O6 N N N 0 -0.065 -3.466 -0.052
14 H1 H H1 N N N 0 1.279 0.319 1.55
15 H1M1 H H1M1 N N N 0 3.6 -0.312 1.483
16 H1M2 H H1M2 N N N 0 3.276 -1.208 -0.021
17 H1M3 H H1M3 N N N 0 4.542 0.043 0.015
18 H2 H H2 N N N 0 0.692 2.533 0.633
19 HO2 H HO2 N N N 0 1.262 2.069 -1.641
20 H3 H H3 N N N 0 -1.112 1.183 1.633
21 HO3 H HO3 N N N 0 -1.733 3.218 0.544
22 H4 H H4 N N N 0 -1.528 0.134 -1.206
23 HO4 H HO4 N N N 0 -3.499 0.301 0.135
24 H5 H H5 N N N 0 -0.54 -1.275 1.316
25 H62 H H61 N N N 0 -1.953 -2.649 -0.243
26 H61 H H62 N N N 0 -0.816 -2.266 -1.557
27 HO6 H HO6 N N N 0 -0.258 -4.318 -0.468