Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : Z2V

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 57


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C02 C C1 N N N 0 -0.27 2.642 0.158
2 C03 C C2 S N N 0 -0.654 1.278 -0.371
3 C04 C C3 R N N 0 -2.01 0.866 0.206
4 C06 C C4 N N N 0 -2.455 -0.453 -0.429
5 C07 C C5 N N N 0 -3.867 -0.798 0.048
6 C08 C C6 N N N 0 -4.859 0.24 -0.487
7 C09 C C7 N N N 0 -6.257 -0.171 -0.108
8 C11 C C8 N N N 0 -5.699 -2.457 -0.107
9 C12 C C9 N N N 0 -4.268 -2.177 -0.486
10 C15 C C10 N N N 0 0.416 0.269 0.058
11 C16 C C11 R N N 0 1.79 0.76 -0.402
12 C18 C C12 N N N 0 4.096 -0.029 -0.382
13 C19 C C13 N Y N 0 5.117 -1.044 -0.047
14 C20 C C14 N Y N 0 6.457 -0.822 -0.369
15 C21 C C15 N Y N 0 7.405 -1.773 -0.053
16 C22 C C16 N Y N 0 7.031 -2.944 0.581
17 C23 C C17 N Y N 0 5.704 -3.17 0.903
18 C24 C C18 N Y N 0 4.747 -2.224 0.599
19 C26 C C19 N N N 0 1.771 0.981 -1.916
20 C27 C C20 N N N 0 2.132 2.076 0.298
21 C28 C C21 S N N 0 1.126 3.153 -0.122
22 C29 C C22 N N N 0 1.376 4.431 0.68
23 N10 N N1 N N N 0 -6.585 -1.462 0.05
24 N17 N N2 N N N 0 2.803 -0.246 -0.069
25 O01 O O1 N N N 0 -1.059 3.308 0.784
26 O05 O O2 N N N 0 -1.894 0.697 1.62
27 O13 O O3 N N N 0 -6.056 -3.603 0.059
28 O14 O O4 N N N 0 -7.103 0.681 0.058
29 O25 O O5 N N N 0 4.422 1.001 -0.94
30 H2 H H2 N N N 0 -0.715 1.311 -1.459
31 H3 H H3 N N N 0 -2.747 1.64 -0.009
32 H4 H H4 N N N 0 -2.453 -0.352 -1.515
33 H5 H H5 N N N 0 -1.768 -1.247 -0.137
34 H6 H H6 N N N 0 -3.893 -0.806 1.138
35 H7 H H7 N N N 0 -4.636 1.215 -0.053
36 H8 H H8 N N N 0 -4.778 0.296 -1.572
37 H11 H H11 N N N 0 -4.17 -2.19 -1.571
38 H12 H H12 N N N 0 -3.621 -2.939 -0.051
39 H13 H H13 N N N 0 0.41 0.172 1.144
40 H14 H H14 N N N 0 0.206 -0.7 -0.395
41 H15 H H15 N N N 0 6.751 0.091 -0.865
42 H16 H H16 N N N 0 8.443 -1.604 -0.303
43 H17 H H17 N N N 0 7.777 -3.685 0.826
44 H18 H H18 N N N 0 5.418 -4.086 1.398
45 H19 H H19 N N N 0 3.713 -2.4 0.855
46 H20 H H20 N N N 0 1.016 1.727 -2.164
47 H21 H H21 N N N 0 2.75 1.33 -2.244
48 H22 H H22 N N N 0 1.533 0.043 -2.417
49 H23 H H23 N N N 0 2.085 1.936 1.378
50 H24 H H24 N N N 0 3.138 2.388 0.016
51 H25 H H25 N N N 0 1.234 3.358 -1.187
52 H26 H H26 N N N 0 2.388 4.788 0.489
53 H27 H H27 N N N 0 0.659 5.195 0.379
54 H28 H H28 N N N 0 1.259 4.222 1.743
55 H29 H H29 N N N 0 -7.498 -1.686 0.288
56 H31 H H31 N N N 0 2.542 -1.067 0.375
57 H33 H H33 N N N 0 -1.254 0.023 1.885