Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : Z5H

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 51


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C01 C C1 N Y N 0 -1.66 2.742 0.233
2 C02 C C2 N Y N 0 -1.778 1.365 0.243
3 C03 C C3 N Y N 0 -3.017 0.776 0.068
4 C04 C C4 N Y N 0 -4.137 1.564 -0.117
5 C05 C C5 N Y N 0 -4.019 2.942 -0.127
6 C06 C C6 N Y N 0 -2.782 3.531 0.053
7 C07 C C7 N N N 0 -2.653 5.032 0.042
8 C08 C C8 N N N 0 -3.145 -0.725 0.079
9 C09 C C9 N N N 0 -3.995 -1.173 1.281
10 C10 C C10 N N N 0 -5.224 -1.905 0.704
11 C11 C C11 N N N 0 -4.759 -2.383 -0.695
12 C12 C C12 N N N 0 -3.886 -1.201 -1.188
13 C13 C C13 N Y N 0 -1.78 -1.36 0.147
14 C14 C C14 N Y N 0 0.209 -1.931 -0.294
15 C15 C C15 N N N 0 1.563 -2.096 -0.935
16 C16 C C16 N N N 0 3.857 -1.326 -0.845
17 C17 C C17 N Y N 0 4.789 -0.394 -0.113
18 C18 C C18 N N N 0 2.042 0.277 -0.862
19 C19 C C19 N Y N 0 5.365 -0.649 1.062
20 C20 C C20 N Y N 0 6.274 1.431 0.754
21 C21 C C21 N Y N 0 6.185 0.358 1.541
22 N01 N N1 N Y N 0 -1.348 -2.159 1.076
23 N02 N N2 N Y N 0 -0.786 -1.207 -0.747
24 N03 N N3 N N N 0 2.473 -1.059 -0.43
25 O01 O O1 N Y N 0 -0.207 -2.497 0.842
26 S01 S S1 N Y N 0 5.29 1.192 -0.684
27 H17 H H1 N N N 0 -0.693 3.203 0.369
28 H18 H H2 N N N 0 -0.903 0.749 0.387
29 H19 H H3 N N N 0 -5.104 1.104 -0.254
30 H16 H H4 N N N 0 -4.894 3.558 -0.272
31 H03 H H5 N N N 0 -2.474 5.374 -0.977
32 H02 H H6 N N N 0 -3.573 5.479 0.418
33 H01 H H7 N N N 0 -1.819 5.33 0.677
34 H05 H H8 N N N 0 -3.42 -1.85 1.913
35 H04 H H9 N N N 0 -4.314 -0.304 1.857
36 H06 H H10 N N N 0 -5.489 -2.758 1.33
37 H07 H H11 N N N 0 -6.068 -1.222 0.615
38 H08 H H12 N N N 0 -4.166 -3.293 -0.614
39 H09 H H13 N N N 0 -5.614 -2.537 -1.353
40 H10 H H14 N N N 0 -4.514 -0.403 -1.585
41 H11 H H15 N N N 0 -3.175 -1.54 -1.941
42 H12 H H16 N N N 0 1.963 -3.08 -0.693
43 H13 H H17 N N N 0 1.467 -1.999 -2.017
44 H15 H H18 N N N 0 3.951 -1.165 -1.919
45 H14 H H19 N N N 0 4.115 -2.358 -0.608
46 H20 H H20 N N N 0 1.04 0.476 -0.481
47 H21 H H21 N N N 0 2.733 1.025 -0.474
48 H22 H H22 N N N 0 2.033 0.321 -1.951
49 H25 H H23 N N N 0 5.204 -1.572 1.6
50 H23 H H24 N N N 0 6.864 2.311 0.966
51 H24 H H25 N N N 0 6.711 0.281 2.481