Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : Z5J

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 22


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O4 O O1 N N N 0 2.478 -0.322 0.242
2 C4 C C1 R N N 0 1.142 -0.14 -0.229
3 O1 O O4 N N Y 0 -3.019 0.254 -0.106
4 C5 C C2 S N N 0 0.257 -1.277 0.289
5 C6 C C3 N N N 0 0.76 -2.609 -0.268
6 O5 O O2 N N N 0 -1.091 -1.061 -0.135
7 C3 C C4 S N N 0 0.596 1.196 0.284
8 O3 O O3 N N N 0 1.372 2.268 -0.254
9 C2 C C5 N N N 0 -0.862 1.345 -0.162
10 C1 C C6 S N N 0 -1.67 0.151 0.354
11 HO1 H H4O N N Y 0 -3.589 -0.472 0.183
12 H4 H H11 N N N 0 1.136 -0.142 -1.319
13 H5 H H21 N N N 0 0.296 -1.3 1.378
14 H61 H H31 N N N 0 1.788 -2.773 0.055
15 H62 H H32 N N N 0 0.13 -3.419 0.101
16 H63 H H33 N N N 0 0.721 -2.586 -1.357
17 H3 H H41 N N N 0 0.649 1.218 1.373
18 HO3 H H3O N N Y 0 1.081 3.146 0.03
19 H21 H H51 N N N 0 -1.276 2.267 0.246
20 H22 H H52 N N N 0 -0.909 1.373 -1.25
21 H1 H H61 N N N 0 -1.656 0.146 1.444
22 HO4 H H1O N N Y 0 3.095 0.363 -0.049