Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : ZBD

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 69


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 0.603 3.032 -0.308
2 C7 C C1 N N N 0 2.003 3.261 -0.676
3 C8 C C2 N Y N 0 2.757 1.958 -0.618
4 C10 C C3 N Y N 0 3.531 -0.04 -1.686
5 C13 C C4 N Y N 0 3.366 1.564 0.559
6 C15 C C5 N N N 0 6.352 -1.465 -0.064
7 C24 C C6 N Y N 0 0.053 2.997 0.99
8 C26 C C7 N Y N 0 -1.958 2.703 2.272
9 C28 C C8 N Y N 0 0.107 3.119 3.4
10 O31 O O1 N N N 0 -0.486 1.495 -1.941
11 S5 S S1 N N N 0 -0.683 2.764 -1.333
12 O30 O O2 N N N 0 -0.91 3.969 -2.053
13 C25 C C9 N Y N 0 -1.31 2.759 1.033
14 N6 N N2 N N N 0 -1.92 2.602 -0.229
15 C32 C C10 N N N 0 -3.336 2.347 -0.508
16 C33 C C11 N N N 0 -3.61 0.844 -0.418
17 C34 C C12 N N N 0 -5.088 0.577 -0.71
18 C2 C C13 N N N 0 -5.358 -0.903 -0.62
19 N4 N N3 N N N 0 -6.601 -1.375 -0.841
20 C39 C C14 N N N 0 -7.689 -0.45 -1.167
21 C37 C C15 R N N 0 -6.863 -2.814 -0.754
22 C40 C C16 N N N 0 -7.386 -3.319 -2.101
23 C35 C C17 N N N 0 -7.91 -3.077 0.33
24 C38 C C18 N N N 0 -7.339 -2.687 1.695
25 O36 O O3 N N N 0 -8.316 -2.932 2.708
26 O3 O O4 N N N 0 -4.457 -1.668 -0.35
27 C27 C C19 N Y N 0 -1.255 2.882 3.443
28 C29 C C20 N Y N 0 0.756 3.177 2.186
29 C12 C C21 N Y N 0 4.059 0.369 0.613
30 C11 C C22 N Y N 0 4.141 -0.433 -0.51
31 C9 C C23 N Y N 0 2.835 1.153 -1.739
32 C14 C C24 N N N 0 4.897 -1.736 -0.451
33 O17 O O5 N N N 0 4.854 -2.369 -1.731
34 C16 C C25 N N N 0 4.253 -2.651 0.592
35 F20 F F1 N N N 0 2.923 -2.899 0.239
36 F19 F F2 N N N 0 4.954 -3.861 0.647
37 F18 F F3 N N N 0 4.295 -2.031 1.846
38 F21 F F4 N N N 0 7.08 -2.658 -0.125
39 F22 F F5 N N N 0 6.905 -0.535 -0.951
40 F23 F F6 N N N 0 6.401 -0.955 1.237
41 H1 H H1 N N N 0 2.051 3.663 -1.688
42 H2 H H2 N N N 0 2.45 3.971 0.019
43 H3 H H3 N N N 0 3.592 -0.669 -2.562
44 H4 H H4 N N N 0 3.302 2.191 1.436
45 H5 H H5 N N N 0 -3.021 2.518 2.311
46 H6 H H6 N N N 0 0.66 3.259 4.317
47 H7 H H7 N N N 0 -3.951 2.873 0.222
48 H8 H H8 N N N 0 -3.578 2.701 -1.51
49 H9 H H9 N N N 0 -2.994 0.318 -1.148
50 H10 H H10 N N N 0 -3.368 0.49 0.584
51 H11 H H11 N N N 0 -5.703 1.103 0.02
52 H12 H H12 N N N 0 -5.33 0.931 -1.712
53 H13 H H13 N N N 0 -7.743 -0.32 -2.248
54 H14 H H14 N N N 0 -8.632 -0.856 -0.802
55 H15 H H15 N N N 0 -7.501 0.513 -0.695
56 H16 H H16 N N N 0 -5.941 -3.337 -0.504
57 H17 H H17 N N N 0 -7.582 -4.389 -2.036
58 H18 H H18 N N N 0 -8.309 -2.796 -2.352
59 H19 H H19 N N N 0 -6.641 -3.132 -2.874
60 H20 H H20 N N N 0 -8.801 -2.484 0.126
61 H21 H H21 N N N 0 -8.171 -4.135 0.335
62 H22 H H22 N N N 0 -6.447 -3.28 1.899
63 H23 H H23 N N N 0 -7.078 -1.629 1.691
64 H24 H H24 N N N 0 -8.022 -2.708 3.601
65 H25 H H25 N N N 0 -1.766 2.837 4.393
66 H26 H H26 N N N 0 1.819 3.362 2.158
67 H27 H H27 N N N 0 4.536 0.062 1.532
68 H28 H H28 N N N 0 2.355 1.458 -2.657
69 H29 H H29 N N N 0 3.96 -2.571 -2.041