Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : ZID

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 82


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 PA P AP S N N 0 2.398 0.575 -2.273
2 O1A O AO1 N N N 0 3.089 -0.077 -3.408
3 O2A O AO2 N N N 0 1.546 1.83 -2.812
4 O5B O AO5* N N N 0 3.488 1.086 -1.203
5 C5B C AC5* N N N 0 4.571 1.952 -1.549
6 C4B C AC4* R N N 0 5.412 2.239 -0.303
7 O4B O AO4* N N N 0 6.059 1.034 0.138
8 C3B C AC3* S N N 0 6.519 3.256 -0.641
9 O3B O AO3* N N N 0 6.38 4.431 0.16
10 C2B C AC2* R N N 0 7.833 2.516 -0.295
11 O2B O AO2* N N N 0 8.759 3.394 0.349
12 C1B C AC1* R N N 0 7.34 1.418 0.682
13 N9A N AN9 N Y N 0 8.262 0.279 0.687
14 C8A C AC8 N Y N 0 8.191 -0.819 -0.118
15 N7A N AN7 N Y N 0 9.169 -1.633 0.154
16 C5A C AC5 N Y N 0 9.927 -1.111 1.148
17 C6A C AC6 N Y N 0 11.08 -1.528 1.835
18 N6A N AN6 N N N 0 11.688 -2.733 1.531
19 N1A N AN1 N Y N 0 11.571 -0.739 2.784
20 C2A C AC2 N Y N 0 10.998 0.413 3.082
21 N3A N AN3 N Y N 0 9.918 0.844 2.465
22 C4A C AC4 N Y N 0 9.358 0.125 1.497
23 O3 O O3 N N N 0 1.409 -0.481 -1.567
24 PN P NP N N N 0 0.418 -1.625 -2.118
25 O1N O NO1 N N N 0 -0.306 -1.114 -3.384
26 O2N O NO2 N N N -1 1.234 -2.89 -2.466
27 O5D O NO5* N N N 0 -0.67 -1.983 -0.986
28 C5D C NC5* N N N 0 -1.753 -2.888 -1.206
29 C4D C NC4* R N N 0 -2.591 -3.0 0.069
30 O4D O NO4* N N N 0 -3.238 -1.745 0.341
31 C3D C NC3* S N N 0 -3.699 -4.054 -0.123
32 O3D O NO3* N N N 0 -3.559 -5.107 0.834
33 C2D C NC2* R N N 0 -5.013 -3.273 0.121
34 O2D O NO2* N N N 0 -5.937 -4.053 0.882
35 C1D C NC1* R N N 0 -4.518 -2.051 0.936
36 N1N N NN1 N Y N 1 -5.439 -0.922 0.785
37 C2N C NC2 N Y N 0 -6.254 -0.628 1.778
38 C3N C NC3 N Y N 0 -7.145 0.438 1.675
39 C7N C NC7 N N N 0 -8.058 0.767 2.791
40 O7N O NO7 N N N 0 -8.757 1.759 2.732
41 N7N N NN7 N N N 0 -8.115 -0.035 3.873
42 C4N C NC4 N Y N 0 -7.161 1.198 0.486
43 C5N C NC5 N Y N 0 -6.276 0.84 -0.533
44 C6N C NC6 N Y N 0 -5.423 -0.232 -0.338
45 C7Z C ZC7 N N N 0 -8.089 2.34 0.324
46 O7Z O ZO7 N N N 0 -7.675 3.478 0.423
47 N1Z N ZN1 N Y N 0 -12.17 1.645 -0.487
48 C2Z C ZC2 N Y N 0 -11.726 2.886 -0.462
49 C3Z C ZC3 N Y N 0 -10.398 3.16 -0.201
50 C4Z C ZC4 N Y N 0 -9.521 2.096 0.04
51 C5Z C ZC5 N Y N 0 -10.035 0.795 0.003
52 C6Z C ZC6 N Y N 0 -11.378 0.614 -0.266
53 HOA2 H 2HOA N N N 0 1.066 2.306 -2.121
54 H51A H AH51 N N N 0 5.193 1.472 -2.304
55 H52A H AH52 N N N 0 4.176 2.888 -1.944
56 H4B H AH4* N N N 0 4.776 2.63 0.491
57 H3B H AH3* N N N 0 6.491 3.513 -1.7
58 HO3A H AHO3 N N N 0 7.051 5.106 -0.011
59 H2B H AH2* N N N 0 8.277 2.073 -1.187
60 HO2A H AHO2 N N N 0 9.027 4.148 -0.192
61 H1B H AH1* N N N 0 7.224 1.823 1.687
62 H8A H AH8 N N N 0 7.434 -0.988 -0.87
63 H61A H AH61 N N N 0 11.32 -3.3 0.835
64 H62A H AH62 N N N 0 12.483 -3.01 2.012
65 H2A H AH2 N N N 0 11.43 1.023 3.86
66 H51N H NH51 N N N 0 -2.377 -2.517 -2.019
67 H52N H NH52 N N N 0 -1.359 -3.87 -1.469
68 H4D H NH4* N N N 0 -1.954 -3.278 0.909
69 H3D H NH3* N N N 0 -3.673 -4.455 -1.136
70 HO3N H NHO3 N N N 0 -4.23 -5.799 0.758
71 H2D H NH2* N N N 0 -5.458 -2.957 -0.823
72 HO2N H NHO2 N N N 0 -6.206 -4.875 0.451
73 H1D H NH1* N N N 0 -4.399 -2.313 1.987
74 H2N H NH2 N N N 0 -6.23 -1.219 2.681
75 H71N H NH71 N N N 0 -7.557 -0.827 3.92
76 H72N H NH72 N N N 0 -8.714 0.181 4.606
77 H5N H NH5 N N N 0 -6.256 1.395 -1.459
78 H6N H NH6 N N N 0 -4.733 -0.51 -1.122
79 H2Z H ZH2 N N N 0 -12.411 3.7 -0.649
80 H3Z H ZH3 N N N 0 -10.042 4.179 -0.183
81 H5Z H ZH5 N N N 0 -9.393 -0.054 0.183
82 H6Z H ZH6 N N N 0 -11.785 -0.386 -0.296