![spacer](http://www.ebi.ac.uk/inc/images/spacer.gif) |
PDBeChem : Atoms of Molecule
Molecule : ZID
Atoms of a chemical element, that composes a molecule
Total Number of Atoms: 82
Record |
Atom Name |
Symbol |
PDB Name |
Stereochemistry |
Is Aromatic |
Is Leaving Atom |
Charge |
X-Coordinate |
Y-Coordinate |
Z-Coordinate |
1 |
PA |
P |
AP |
S |
N |
N |
0 |
2.398 |
0.575 |
-2.273 |
2 |
O1A |
O |
AO1 |
N |
N |
N |
0 |
3.089 |
-0.077 |
-3.408 |
3 |
O2A |
O |
AO2 |
N |
N |
N |
0 |
1.546 |
1.83 |
-2.812 |
4 |
O5B |
O |
AO5* |
N |
N |
N |
0 |
3.488 |
1.086 |
-1.203 |
5 |
C5B |
C |
AC5* |
N |
N |
N |
0 |
4.571 |
1.952 |
-1.549 |
6 |
C4B |
C |
AC4* |
R |
N |
N |
0 |
5.412 |
2.239 |
-0.303 |
7 |
O4B |
O |
AO4* |
N |
N |
N |
0 |
6.059 |
1.034 |
0.138 |
8 |
C3B |
C |
AC3* |
S |
N |
N |
0 |
6.519 |
3.256 |
-0.641 |
9 |
O3B |
O |
AO3* |
N |
N |
N |
0 |
6.38 |
4.431 |
0.16 |
10 |
C2B |
C |
AC2* |
R |
N |
N |
0 |
7.833 |
2.516 |
-0.295 |
11 |
O2B |
O |
AO2* |
N |
N |
N |
0 |
8.759 |
3.394 |
0.349 |
12 |
C1B |
C |
AC1* |
R |
N |
N |
0 |
7.34 |
1.418 |
0.682 |
13 |
N9A |
N |
AN9 |
N |
Y |
N |
0 |
8.262 |
0.279 |
0.687 |
14 |
C8A |
C |
AC8 |
N |
Y |
N |
0 |
8.191 |
-0.819 |
-0.118 |
15 |
N7A |
N |
AN7 |
N |
Y |
N |
0 |
9.169 |
-1.633 |
0.154 |
16 |
C5A |
C |
AC5 |
N |
Y |
N |
0 |
9.927 |
-1.111 |
1.148 |
17 |
C6A |
C |
AC6 |
N |
Y |
N |
0 |
11.08 |
-1.528 |
1.835 |
18 |
N6A |
N |
AN6 |
N |
N |
N |
0 |
11.688 |
-2.733 |
1.531 |
19 |
N1A |
N |
AN1 |
N |
Y |
N |
0 |
11.571 |
-0.739 |
2.784 |
20 |
C2A |
C |
AC2 |
N |
Y |
N |
0 |
10.998 |
0.413 |
3.082 |
21 |
N3A |
N |
AN3 |
N |
Y |
N |
0 |
9.918 |
0.844 |
2.465 |
22 |
C4A |
C |
AC4 |
N |
Y |
N |
0 |
9.358 |
0.125 |
1.497 |
23 |
O3 |
O |
O3 |
N |
N |
N |
0 |
1.409 |
-0.481 |
-1.567 |
24 |
PN |
P |
NP |
N |
N |
N |
0 |
0.418 |
-1.625 |
-2.118 |
25 |
O1N |
O |
NO1 |
N |
N |
N |
0 |
-0.306 |
-1.114 |
-3.384 |
26 |
O2N |
O |
NO2 |
N |
N |
N |
-1 |
1.234 |
-2.89 |
-2.466 |
27 |
O5D |
O |
NO5* |
N |
N |
N |
0 |
-0.67 |
-1.983 |
-0.986 |
28 |
C5D |
C |
NC5* |
N |
N |
N |
0 |
-1.753 |
-2.888 |
-1.206 |
29 |
C4D |
C |
NC4* |
R |
N |
N |
0 |
-2.591 |
-3.0 |
0.069 |
30 |
O4D |
O |
NO4* |
N |
N |
N |
0 |
-3.238 |
-1.745 |
0.341 |
31 |
C3D |
C |
NC3* |
S |
N |
N |
0 |
-3.699 |
-4.054 |
-0.123 |
32 |
O3D |
O |
NO3* |
N |
N |
N |
0 |
-3.559 |
-5.107 |
0.834 |
33 |
C2D |
C |
NC2* |
R |
N |
N |
0 |
-5.013 |
-3.273 |
0.121 |
34 |
O2D |
O |
NO2* |
N |
N |
N |
0 |
-5.937 |
-4.053 |
0.882 |
35 |
C1D |
C |
NC1* |
R |
N |
N |
0 |
-4.518 |
-2.051 |
0.936 |
36 |
N1N |
N |
NN1 |
N |
Y |
N |
1 |
-5.439 |
-0.922 |
0.785 |
37 |
C2N |
C |
NC2 |
N |
Y |
N |
0 |
-6.254 |
-0.628 |
1.778 |
38 |
C3N |
C |
NC3 |
N |
Y |
N |
0 |
-7.145 |
0.438 |
1.675 |
39 |
C7N |
C |
NC7 |
N |
N |
N |
0 |
-8.058 |
0.767 |
2.791 |
40 |
O7N |
O |
NO7 |
N |
N |
N |
0 |
-8.757 |
1.759 |
2.732 |
41 |
N7N |
N |
NN7 |
N |
N |
N |
0 |
-8.115 |
-0.035 |
3.873 |
42 |
C4N |
C |
NC4 |
N |
Y |
N |
0 |
-7.161 |
1.198 |
0.486 |
43 |
C5N |
C |
NC5 |
N |
Y |
N |
0 |
-6.276 |
0.84 |
-0.533 |
44 |
C6N |
C |
NC6 |
N |
Y |
N |
0 |
-5.423 |
-0.232 |
-0.338 |
45 |
C7Z |
C |
ZC7 |
N |
N |
N |
0 |
-8.089 |
2.34 |
0.324 |
46 |
O7Z |
O |
ZO7 |
N |
N |
N |
0 |
-7.675 |
3.478 |
0.423 |
47 |
N1Z |
N |
ZN1 |
N |
Y |
N |
0 |
-12.17 |
1.645 |
-0.487 |
48 |
C2Z |
C |
ZC2 |
N |
Y |
N |
0 |
-11.726 |
2.886 |
-0.462 |
49 |
C3Z |
C |
ZC3 |
N |
Y |
N |
0 |
-10.398 |
3.16 |
-0.201 |
50 |
C4Z |
C |
ZC4 |
N |
Y |
N |
0 |
-9.521 |
2.096 |
0.04 |
51 |
C5Z |
C |
ZC5 |
N |
Y |
N |
0 |
-10.035 |
0.795 |
0.003 |
52 |
C6Z |
C |
ZC6 |
N |
Y |
N |
0 |
-11.378 |
0.614 |
-0.266 |
53 |
HOA2 |
H |
2HOA |
N |
N |
N |
0 |
1.066 |
2.306 |
-2.121 |
54 |
H51A |
H |
AH51 |
N |
N |
N |
0 |
5.193 |
1.472 |
-2.304 |
55 |
H52A |
H |
AH52 |
N |
N |
N |
0 |
4.176 |
2.888 |
-1.944 |
56 |
H4B |
H |
AH4* |
N |
N |
N |
0 |
4.776 |
2.63 |
0.491 |
57 |
H3B |
H |
AH3* |
N |
N |
N |
0 |
6.491 |
3.513 |
-1.7 |
58 |
HO3A |
H |
AHO3 |
N |
N |
N |
0 |
7.051 |
5.106 |
-0.011 |
59 |
H2B |
H |
AH2* |
N |
N |
N |
0 |
8.277 |
2.073 |
-1.187 |
60 |
HO2A |
H |
AHO2 |
N |
N |
N |
0 |
9.027 |
4.148 |
-0.192 |
61 |
H1B |
H |
AH1* |
N |
N |
N |
0 |
7.224 |
1.823 |
1.687 |
62 |
H8A |
H |
AH8 |
N |
N |
N |
0 |
7.434 |
-0.988 |
-0.87 |
63 |
H61A |
H |
AH61 |
N |
N |
N |
0 |
11.32 |
-3.3 |
0.835 |
64 |
H62A |
H |
AH62 |
N |
N |
N |
0 |
12.483 |
-3.01 |
2.012 |
65 |
H2A |
H |
AH2 |
N |
N |
N |
0 |
11.43 |
1.023 |
3.86 |
66 |
H51N |
H |
NH51 |
N |
N |
N |
0 |
-2.377 |
-2.517 |
-2.019 |
67 |
H52N |
H |
NH52 |
N |
N |
N |
0 |
-1.359 |
-3.87 |
-1.469 |
68 |
H4D |
H |
NH4* |
N |
N |
N |
0 |
-1.954 |
-3.278 |
0.909 |
69 |
H3D |
H |
NH3* |
N |
N |
N |
0 |
-3.673 |
-4.455 |
-1.136 |
70 |
HO3N |
H |
NHO3 |
N |
N |
N |
0 |
-4.23 |
-5.799 |
0.758 |
71 |
H2D |
H |
NH2* |
N |
N |
N |
0 |
-5.458 |
-2.957 |
-0.823 |
72 |
HO2N |
H |
NHO2 |
N |
N |
N |
0 |
-6.206 |
-4.875 |
0.451 |
73 |
H1D |
H |
NH1* |
N |
N |
N |
0 |
-4.399 |
-2.313 |
1.987 |
74 |
H2N |
H |
NH2 |
N |
N |
N |
0 |
-6.23 |
-1.219 |
2.681 |
75 |
H71N |
H |
NH71 |
N |
N |
N |
0 |
-7.557 |
-0.827 |
3.92 |
76 |
H72N |
H |
NH72 |
N |
N |
N |
0 |
-8.714 |
0.181 |
4.606 |
77 |
H5N |
H |
NH5 |
N |
N |
N |
0 |
-6.256 |
1.395 |
-1.459 |
78 |
H6N |
H |
NH6 |
N |
N |
N |
0 |
-4.733 |
-0.51 |
-1.122 |
79 |
H2Z |
H |
ZH2 |
N |
N |
N |
0 |
-12.411 |
3.7 |
-0.649 |
80 |
H3Z |
H |
ZH3 |
N |
N |
N |
0 |
-10.042 |
4.179 |
-0.183 |
81 |
H5Z |
H |
ZH5 |
N |
N |
N |
0 |
-9.393 |
-0.054 |
0.183 |
82 |
H6Z |
H |
ZH6 |
N |
N |
N |
0 |
-11.785 |
-0.386 |
-0.296 |
|