Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : ZJK

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 63


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 RU1 RU RU1 N N N 0 -1.222 -0.293 0.025
2 RU2 RU RU2 N N N 0 0.704 0.733 -1.121
3 O1 O O1 N N N 0 -0.161 -0.215 -2.457
4 O2 O O2 N N N 0 -2.223 -0.902 -1.36
5 N1 N N1 N N N 0 0.544 1.669 0.577
6 N4 N N2 N N N 0 1.741 -0.759 -0.476
7 N3 N N3 N N N 0 -0.271 -1.637 1.031
8 N2 N N4 N N N 0 -1.887 1.156 1.073
9 C1 C C1 N Y N 0 3.131 -0.914 -0.687
10 C2 C C2 N Y N 0 -1.234 -3.485 -0.187
11 C3 C C3 N Y N 0 -0.964 -2.85 1.019
12 C4 C C4 N Y N 0 3.829 0.019 -1.443
13 C5 C C5 N Y N 0 1.618 1.863 1.469
14 C6 C C6 N Y N 0 5.85 -1.217 -1.099
15 C7 C C7 N Y N 0 -1.384 -3.424 2.212
16 C8 C C8 N N N 0 -1.58 -0.123 -2.436
17 C9 C C9 N Y N 0 -3.102 1.626 0.569
18 C10 C C10 N Y N 0 -2.069 -4.623 2.196
19 C11 C C11 N Y N 0 3.803 -1.996 -0.133
20 C12 C C12 N Y N 0 5.186 -0.135 -1.647
21 C13 C C13 N N N 0 -0.798 2.167 0.867
22 C14 C C14 N Y N 0 -2.336 -5.253 0.995
23 C15 C C15 N Y N 0 2.826 2.368 1.005
24 C16 C C16 N N N 0 1.001 -1.767 0.269
25 C17 C C17 N Y N 0 5.16 -2.145 -0.34
26 C18 C C18 N Y N 0 -1.919 -4.685 -0.195
27 C20 C C19 N Y N 0 1.469 1.555 2.816
28 C21 C C20 N Y N 0 -4.03 0.734 0.046
29 C23 C C21 N Y N 0 -3.387 2.985 0.594
30 C25 C C22 N Y N 0 3.876 2.557 1.882
31 C26 C C23 N Y N 0 2.523 1.747 3.687
32 C27 C C24 N Y N 0 -4.589 3.446 0.095
33 C28 C C25 N Y N 0 -5.231 1.202 -0.451
34 C29 C C26 N Y N 0 3.727 2.244 3.221
35 C30 C C27 N Y N 0 -5.509 2.557 -0.429
36 O5 O O3 N N N 0 0.79 2.259 -2.081
37 H1 H H1 N N N 0 -0.913 -3.04 -1.117
38 H2 H H2 N N N 0 3.31 0.864 -1.872
39 H3 H H3 N N N 0 6.912 -1.335 -1.259
40 H4 H H4 N N N 0 -1.175 -2.932 3.151
41 H5 H H5 N N N 0 -1.86 0.93 -2.322
42 H6 H H6 N N N 0 -1.966 -0.474 -3.401
43 H7 H H7 N N N 0 -2.396 -5.069 3.124
44 H8 H H8 N N N 0 3.264 -2.721 0.459
45 H9 H H9 N N N 0 5.729 0.59 -2.235
46 H10 H H10 N N N 0 -0.728 2.786 1.772
47 H11 H H11 N N N 0 -1.091 2.828 0.04
48 H12 H H12 N N N 0 -2.871 -6.191 0.985
49 H13 H H13 N N N 0 2.944 2.613 -0.04
50 H14 H H14 N N N 0 0.835 -2.59 -0.456
51 H15 H H15 N N N 0 1.739 -2.177 0.991
52 H16 H H16 N N N 0 5.682 -2.988 0.086
53 H17 H H17 N N N 0 -2.133 -5.177 -1.132
54 H18 H H18 N N N 0 0.53 1.167 3.181
55 H19 H H19 N N N 0 -3.814 -0.324 0.029
56 H20 H H20 N N N 0 -2.669 3.68 1.004
57 H21 H H21 N N N 0 4.816 2.95 1.522
58 H22 H H22 N N N 0 2.408 1.508 4.734
59 H23 H H23 N N N 0 -4.811 4.503 0.114
60 H24 H H24 N N N 0 -5.953 0.51 -0.858
61 H25 H H25 N N N 0 4.549 2.392 3.904
62 H26 H H26 N N N 0 -6.449 2.92 -0.818
63 H27 H H27 N N N 0 1.688 2.593 -2.208