Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : ZP4

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 81


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O5' O O5' N N N 0 4.224 -1.107 -1.052
2 N3' N N3' N N N 0 5.78 2.637 -3.325
3 N3A N N3A N N N 1 6.443 3.207 -4.031
4 N3B N N3B N N N -1 7.105 3.778 -4.737
5 N1 N N1 N N N 0 6.962 2.745 1.134
6 C6 C C6 N N N 0 6.85 3.91 1.843
7 C2 C C2 N N N 0 7.731 1.738 1.587
8 C4 C C4 N N N 0 8.333 2.987 3.467
9 O2 O O2 N N N 0 7.811 0.709 0.943
10 N3 N N3 N N N 0 8.412 1.853 2.741
11 C2' C C2' N N N 0 7.217 2.465 -1.316
12 O4 O O4 N N N 0 8.95 3.092 4.512
13 C5 C C5 N N N 0 7.523 4.052 3.005
14 C5A C C5A N N N 0 7.418 5.33 3.796
15 C5' C C5' N N N 0 5.32 -0.495 -1.734
16 C4' C C4' S N N 0 5.265 1.021 -1.529
17 O4' O O4' N N N 0 5.516 1.336 -0.149
18 C1' C C1' R N N 0 6.232 2.59 -0.127
19 C3' C C3' S N N 0 6.368 1.702 -2.362
20 PA P PA R N N 0 3.968 -2.697 -1.053
21 O1A O O1A N N N 0 5.178 -3.435 -0.289
22 O2A O O2A N N N 0 3.896 -3.184 -2.449
23 O3A O O3A N N N 0 2.582 -3.018 -0.301
24 PB P PB R N N 0 1.624 -4.31 -0.224
25 O1B O O1B N N N 0 2.229 -5.364 0.832
26 O2B O O2B N N N 0 1.541 -4.942 -1.559
27 O3B O O3B N N N 0 0.153 -3.86 0.25
28 PG P PG S N N 0 -1.293 -4.568 0.233
29 O1G O O1G N N N 0 -1.463 -5.313 -1.034
30 O2G O O2G N N N 0 -1.406 -5.588 1.474
31 O3G O O3G N N N 0 -2.442 -3.447 0.354
32 PD P PD R N N 0 -4.031 -3.441 0.097
33 O1D O O1D N N N 0 -4.319 -3.435 -1.487
34 O2D O O2D N N N 0 -4.633 -4.649 0.704
35 O51 O O51 N N N 0 -4.678 -2.126 0.765
36 C51 C C51 N N N 0 -6.086 -1.884 0.8
37 C41 C C41 R N N 0 -6.356 -0.552 1.503
38 O41 O O41 N N N 0 -5.838 0.531 0.713
39 C11 C C11 R N N 0 -6.728 1.653 0.9
40 C21 C C21 R N N 0 -8.135 1.002 0.899
41 O21 O O21 N N N 0 -9.071 1.81 1.614
42 C31 C C31 S N N 0 -7.875 -0.332 1.641
43 O31 O O31 N N N 0 -8.241 -0.217 3.018
44 N9R N N9R N Y N 0 -6.596 2.605 -0.205
45 C8R C C8R N Y N 0 -6.141 2.328 -1.459
46 N7R N N7R N Y N 0 -6.156 3.407 -2.187
47 C5R C C5R N Y N 0 -6.621 4.442 -1.448
48 C6R C C6R N Y N 0 -6.852 5.806 -1.694
49 N6R N N6R N N N 0 -6.588 6.357 -2.935
50 N1R N N1R N Y N 0 -7.331 6.556 -0.706
51 C2R C C2R N Y N 0 -7.587 6.039 0.482
52 N3R N N3R N Y N 0 -7.386 4.767 0.758
53 C4R C C4R N Y N 0 -6.915 3.94 -0.169
54 H6 H H6 N N N 0 6.228 4.712 1.475
55 HN3 H HN3 N N N 0 8.962 1.118 3.053
56 H5A H H5A N N N 0 8.032 5.254 4.694
57 H5AA H H5AA N N N 0 7.766 6.165 3.188
58 H5AB H H5AB N N N 0 6.379 5.497 4.081
59 H2' H H2' N N N 0 7.503 3.448 -1.69
60 H2'A H H2'A N N N 0 8.097 1.887 -1.034
61 H5' H H5' N N N 0 6.258 -0.882 -1.336
62 H5'A H H5'A N N N 0 5.256 -0.72 -2.799
63 H4' H H4' N N N 0 4.288 1.4 -1.827
64 H1' H H1' N N N 0 5.55 3.427 -0.28
65 H3' H H3' N N N 0 6.975 0.956 -2.875
66 HO1A H HO1A N N N 0 5.284 -3.164 0.633
67 HO1B H HO1B N N N 0 2.312 -5.017 1.731
68 HO2G H HO2G N N N 0 -1.304 -5.167 2.339
69 HO1D H HO1D N N N 0 -3.952 -2.67 -1.95
70 H51 H H51 N N N 0 -6.473 -1.843 -0.218
71 H51A H H51A N N N 0 -6.58 -2.689 1.344
72 H41 H H41 N N N 0 -5.888 -0.551 2.487
73 H11 H H11 N N N 0 -6.533 2.143 1.854
74 H21 H H21 N N N 0 -8.478 0.819 -0.119
75 HO21 H HO21 N N N 0 -9.966 1.444 1.642
76 H31 H H31 N N N 0 -8.424 -1.146 1.167
77 HO31 H HO31 N N N 0 -9.176 -0.02 3.162
78 H8R H H8R N N N 0 -5.815 1.356 -1.799
79 HN6R H HN6R N N N 0 -6.239 5.8 -3.649
80 HN6A H HN6A N N N 0 -6.751 7.3 -3.093
81 H2R H H2R N N N 0 -7.975 6.683 1.257