Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 0E9    

Bonds between two atoms of the molecule

Total Number of Bonds: 109


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 O1 C O doub 1.21 N N
2 C1 O2 C O sing 1.35 N N
3 O2 C2 O C sing 1.45 N N
4 C2 C3 C C sing 1.51 N N
5 C2 H21 C H sing 1.09 N N
6 C2 H22 C H sing 1.09 N N
7 C3 C4 C C doub 1.38 N Y
8 C3 C8 C C sing 1.38 N Y
9 C4 C5 C C sing 1.38 N Y
10 C4 H41 C H sing 1.08 N N
11 C5 C6 C C doub 1.38 N Y
12 C5 H51 C H sing 1.08 N N
13 C6 C7 C C sing 1.38 N Y
14 C6 H61 C H sing 1.08 N N
15 C7 C8 C C doub 1.38 N Y
16 C7 H71 C H sing 1.08 N N
17 C8 H81 C H sing 1.08 N N
18 N CA N C sing 1.47 N N
19 N H N H sing 0.97 N N
20 CA C C C sing 1.51 N N
21 CA CB C C sing 1.53 N N
22 CA HA C H sing 1.09 N N
23 C O C O doub 1.21 N N
24 CB CG1 C C sing 1.53 N N
25 CB CG2 C C sing 1.53 N N
26 CB HB C H sing 1.09 N N
27 CG1 HG11 C H sing 1.09 N N
28 CG1 HG12 C H sing 1.09 N N
29 CG1 HG13 C H sing 1.09 N N
30 CG2 HG21 C H sing 1.09 N N
31 CG2 HG22 C H sing 1.09 N N
32 CG2 HG23 C H sing 1.09 N N
33 C11 C21 C C sing 1.53 N N
34 C11 C1A C C sing 1.51 N N
35 C11 H11 C H sing 1.09 N N
36 C11 H12 C H sing 1.09 N N
37 C21 N2 C N sing 1.47 N N
38 C21 C31 C C sing 1.53 N N
39 C21 H2 C H sing 1.09 N N
40 N2 HN22 N H sing 0.97 N N
41 C31 O3 C O sing 1.43 N N
42 C31 C41 C C sing 1.53 N N
43 C31 H3 C H sing 1.09 N N
44 O3 HO3 O H sing 0.97 N N
45 C41 N4 C N sing 1.46 N N
46 C41 C51 C C sing 1.53 N N
47 C41 H4 C H sing 1.09 N N
48 N4 HN42 N H sing 0.97 N N
49 C51 C1B C C sing 1.51 N N
50 C51 H511 C H sing 1.09 N N
51 C51 H52 C H sing 1.09 N N
52 C1A C2A C C doub 1.38 N Y
53 C1A C6A C C sing 1.38 N Y
54 C2A C3A C C sing 1.38 N Y
55 C2A H2A C H sing 1.08 N N
56 C3A C4A C C doub 1.38 N Y
57 C3A H3A C H sing 1.08 N N
58 C4A C5A C C sing 1.38 N Y
59 C4A H4A C H sing 1.08 N N
60 C5A C6A C C doub 1.38 N Y
61 C5A H5A C H sing 1.08 N N
62 C6A H6A C H sing 1.08 N N
63 C1B C2B C C doub 1.38 N Y
64 C1B C6B C C sing 1.38 N Y
65 C2B C3B C C sing 1.38 N Y
66 C2B H2B C H sing 1.08 N N
67 C3B C4B C C doub 1.38 N Y
68 C3B H3B C H sing 1.08 N N
69 C4B C5B C C sing 1.38 N Y
70 C4B H4B C H sing 1.08 N N
71 C5B C6B C C doub 1.38 N Y
72 C5B H5B C H sing 1.08 N N
73 C6B H6B C H sing 1.08 N N
74 N1 CA1 N C sing 1.46 N N
75 N1 H1 N H sing 0.97 N N
76 CA1 C9 C C sing 1.51 N N
77 CA1 CB1 C C sing 1.53 N N
78 CA1 HA1 C H sing 1.09 N N
79 C9 O4 C O doub 1.21 N N
80 CB1 CG11 C C sing 1.53 N N
81 CB1 CG21 C C sing 1.53 N N
82 CB1 HB1 C H sing 1.09 N N
83 CG11 HG14 C H sing 1.09 N N
84 CG11 HG15 C H sing 1.09 N N
85 CG11 HG16 C H sing 1.09 N N
86 CG21 HG24 C H sing 1.09 N N
87 CG21 HG25 C H sing 1.09 N N
88 CG21 HG26 C H sing 1.09 N N
89 C12 O11 C O doub 1.21 N N
90 C12 O21 C O sing 1.35 N N
91 O21 C22 O C sing 1.45 N N
92 C22 C32 C C sing 1.51 N N
93 C22 H211 C H sing 1.09 N N
94 C22 H221 C H sing 1.09 N N
95 C32 C42 C C doub 1.38 N Y
96 C32 C81 C C sing 1.38 N Y
97 C42 C52 C C sing 1.38 N Y
98 C42 H411 C H sing 1.08 N N
99 C52 C61 C C doub 1.38 N Y
100 C52 H512 C H sing 1.08 N N
101 C61 C71 C C sing 1.38 N Y
102 C61 H611 C H sing 1.08 N N
103 C71 C81 C C doub 1.38 N Y
104 C71 H711 C H sing 1.08 N N
105 C81 H811 C H sing 1.08 N N
106 C1 N C N sing 1.35 N N
107 C N2 C N sing 1.35 N N
108 N4 C9 N C sing 1.35 N N
109 N1 C12 N C sing 1.35 N N