Services
Research
Training
Industry
About us
Protein Data Bank
in Europe
Bringing Structure to Biology
Chemical Components in the PDB
pdbe.org/chem
Feedback
Share
Summary
Atoms
Bonds
In PDB Entries
Names
Descriptors
Complete Listing
Modify Search
Download Links
Molfile:
Ideal
Representative
PDB:
Ideal
Representative
Other:
mmCif
CML
Related compounds
Could not find any related compound in the PDB.
3D-Views
Ideal
Representative
PDB Links
PDB entries
PDBeChem : Chemical Bonds
Molecule :
0L7
Bonds between two atoms of the molecule
Total Number of Bonds: 63
50
10 per page
20 per page
Show all
Record
First Atom
Second Atom
First Element
Second Element
Bond Order Type
Bond Length
Bond Stereochemistry
Is Aromatic
1
O3G
PG
O
P
doub
1.48
N
N
2
O1G
PG
O
P
sing
1.61
N
N
3
PG
O2G
P
O
sing
1.61
N
N
4
PG
O3B
P
O
sing
1.61
N
N
5
O1B
PB
O
P
doub
1.48
N
N
6
O2A
PA
O
P
doub
1.48
N
N
7
O3B
PB
O
P
sing
1.61
N
N
8
PB
O2B
P
O
sing
1.61
N
N
9
PB
O3A
P
O
sing
1.61
N
N
10
C5'
O5'
C
O
sing
1.43
N
N
11
C5'
C4'
C
C
sing
1.53
N
N
12
PA
O3A
P
O
sing
1.61
N
N
13
PA
O5'
P
O
sing
1.61
N
N
14
PA
O1A
P
O
sing
1.61
N
N
15
O3'
C3'
O
C
sing
1.43
N
N
16
C4'
C3'
C
C
sing
1.55
N
N
17
C4'
O4'
C
O
sing
1.45
N
N
18
C3'
C2'
C
C
sing
1.55
N
N
19
O4'
C1'
O
C
sing
1.44
N
N
20
C2'
C1'
C
C
sing
1.54
N
N
21
C1'
N9
C
N
sing
1.46
N
N
22
C8
N9
C
N
sing
1.37
N
Y
23
C8
C7
C
C
doub
1.36
N
Y
24
N9
C4
N
C
sing
1.37
N
Y
25
C7
C32
C
C
sing
1.43
N
N
26
C7
C5
C
C
sing
1.47
N
Y
27
C32
C33
C
C
trip
1.17
N
N
28
C4
N3
C
N
sing
1.34
N
N
29
C4
C5
C
C
doub
1.4
N
Y
30
C33
C34
C
C
sing
1.47
N
N
31
C34
C35
C
C
sing
1.53
N
N
32
N3
C2
N
C
doub
1.31
N
N
33
C5
C6
C
C
sing
1.41
N
N
34
C35
C36
C
C
sing
1.53
N
N
35
C2
N2
C
N
sing
1.37
N
N
36
C2
N1
C
N
sing
1.36
N
N
37
C6
N1
C
N
sing
1.35
N
N
38
C6
O6
C
O
doub
1.22
N
N
39
C36
N37
C
N
sing
1.47
N
N
40
N1
H1
N
H
sing
0.97
N
N
41
N2
H2
N
H
sing
0.97
N
N
42
N2
H3
N
H
sing
0.97
N
N
43
C34
H4
C
H
sing
1.09
N
N
44
C34
H5
C
H
sing
1.09
N
N
45
C35
H6
C
H
sing
1.09
N
N
46
C35
H7
C
H
sing
1.09
N
N
47
C36
H8
C
H
sing
1.09
N
N
48
C36
H9
C
H
sing
1.09
N
N
49
N37
H10
N
H
sing
1.01
N
N
50
N37
H11
N
H
sing
1.01
N
N
51
C8
H13
C
H
sing
1.08
N
N
52
C1'
H14
C
H
sing
1.09
N
N
53
C2'
H15
C
H
sing
1.09
N
N
54
C2'
H16
C
H
sing
1.09
N
N
55
C3'
H17
C
H
sing
1.09
N
N
56
O3'
H18
O
H
sing
0.97
N
N
57
C4'
H19
C
H
sing
1.09
N
N
58
C5'
H20
C
H
sing
1.09
N
N
59
C5'
H21
C
H
sing
1.09
N
N
60
O1A
H22
O
H
sing
0.97
N
N
61
O2B
H23
O
H
sing
0.97
N
N
62
O2G
H24
O
H
sing
0.97
N
N
63
O1G
H25
O
H
sing
0.97
N
N