Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 0L7    

Bonds between two atoms of the molecule

Total Number of Bonds: 63


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O3G PG O P doub 1.48 N N
2 O1G PG O P sing 1.61 N N
3 PG O2G P O sing 1.61 N N
4 PG O3B P O sing 1.61 N N
5 O1B PB O P doub 1.48 N N
6 O2A PA O P doub 1.48 N N
7 O3B PB O P sing 1.61 N N
8 PB O2B P O sing 1.61 N N
9 PB O3A P O sing 1.61 N N
10 C5' O5' C O sing 1.43 N N
11 C5' C4' C C sing 1.53 N N
12 PA O3A P O sing 1.61 N N
13 PA O5' P O sing 1.61 N N
14 PA O1A P O sing 1.61 N N
15 O3' C3' O C sing 1.43 N N
16 C4' C3' C C sing 1.55 N N
17 C4' O4' C O sing 1.45 N N
18 C3' C2' C C sing 1.55 N N
19 O4' C1' O C sing 1.44 N N
20 C2' C1' C C sing 1.54 N N
21 C1' N9 C N sing 1.46 N N
22 C8 N9 C N sing 1.37 N Y
23 C8 C7 C C doub 1.36 N Y
24 N9 C4 N C sing 1.37 N Y
25 C7 C32 C C sing 1.43 N N
26 C7 C5 C C sing 1.47 N Y
27 C32 C33 C C trip 1.17 N N
28 C4 N3 C N sing 1.34 N N
29 C4 C5 C C doub 1.4 N Y
30 C33 C34 C C sing 1.47 N N
31 C34 C35 C C sing 1.53 N N
32 N3 C2 N C doub 1.31 N N
33 C5 C6 C C sing 1.41 N N
34 C35 C36 C C sing 1.53 N N
35 C2 N2 C N sing 1.37 N N
36 C2 N1 C N sing 1.36 N N
37 C6 N1 C N sing 1.35 N N
38 C6 O6 C O doub 1.22 N N
39 C36 N37 C N sing 1.47 N N
40 N1 H1 N H sing 0.97 N N
41 N2 H2 N H sing 0.97 N N
42 N2 H3 N H sing 0.97 N N
43 C34 H4 C H sing 1.09 N N
44 C34 H5 C H sing 1.09 N N
45 C35 H6 C H sing 1.09 N N
46 C35 H7 C H sing 1.09 N N
47 C36 H8 C H sing 1.09 N N
48 C36 H9 C H sing 1.09 N N
49 N37 H10 N H sing 1.01 N N
50 N37 H11 N H sing 1.01 N N
51 C8 H13 C H sing 1.08 N N
52 C1' H14 C H sing 1.09 N N
53 C2' H15 C H sing 1.09 N N
54 C2' H16 C H sing 1.09 N N
55 C3' H17 C H sing 1.09 N N
56 O3' H18 O H sing 0.97 N N
57 C4' H19 C H sing 1.09 N N
58 C5' H20 C H sing 1.09 N N
59 C5' H21 C H sing 1.09 N N
60 O1A H22 O H sing 0.97 N N
61 O2B H23 O H sing 0.97 N N
62 O2G H24 O H sing 0.97 N N
63 O1G H25 O H sing 0.97 N N