Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 0P1    

Bonds between two atoms of the molecule

Total Number of Bonds: 83


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 O1 C O doub 1.22 N N
2 C1 O2 C O sing 1.35 N N
3 O2 C2 O C sing 1.45 N N
4 C2 C3 C C sing 1.51 N N
5 C2 H21 C H sing 1.09 N N
6 C2 H22 C H sing 1.09 N N
7 C3 C4 C C doub 1.38 N Y
8 C3 C8 C C sing 1.38 N Y
9 C4 C5 C C sing 1.38 N Y
10 C4 H41 C H sing 1.08 N N
11 C5 C6 C C doub 1.38 N Y
12 C5 H51 C H sing 1.08 N N
13 C6 C7 C C sing 1.38 N Y
14 C6 H61 C H sing 1.08 N N
15 C7 C8 C C doub 1.38 N Y
16 C7 H71 C H sing 1.08 N N
17 C8 H81 C H sing 1.08 N N
18 N CA N C sing 1.46 N N
19 N H N H sing 0.97 N N
20 CA C C C sing 1.51 N N
21 CA CB C C sing 1.53 N N
22 CA HA C H sing 1.09 N N
23 C O C O doub 1.21 N N
24 CB HB1 C H sing 1.09 N N
25 CB HB2 C H sing 1.09 N N
26 CB HB3 C H sing 1.09 N N
27 N1 CA1 N C sing 1.46 N N
28 N1 H1 N H sing 0.97 N N
29 CA1 C9 C C sing 1.51 N N
30 CA1 CB1 C C sing 1.53 N N
31 CA1 HA1 C H sing 1.09 N N
32 C9 O3 C O doub 1.21 N N
33 CB1 HB11 C H sing 1.09 N N
34 CB1 HB21 C H sing 1.09 N N
35 CB1 HB31 C H sing 1.09 N N
36 CA2 CB2 C C sing 1.53 N N
37 CA2 N2 C N sing 1.47 N N
38 CA2 P C P sing 1.82 N N
39 CA2 HA2 C H sing 1.09 N N
40 CB2 CG C C sing 1.53 N N
41 CB2 HB12 C H sing 1.09 N N
42 CB2 HB22 C H sing 1.09 N N
43 CG CD1 C C sing 1.53 N N
44 CG CD2 C C sing 1.53 N N
45 CG HG C H sing 1.09 N N
46 CD1 HD11 C H sing 1.09 N N
47 CD1 HD12 C H sing 1.09 N N
48 CD1 HD13 C H sing 1.09 N N
49 CD2 HD21 C H sing 1.09 N N
50 CD2 HD22 C H sing 1.09 N N
51 CD2 HD23 C H sing 1.09 N N
52 N2 HN2 N H sing 0.97 N N
53 P O11 P O doub 1.48 N N
54 P O21 P O sing 1.61 N N
55 O21 HO2 O H sing 0.97 N N
56 CA3 CB3 C C sing 1.53 N N
57 CA3 CC C C sing 1.51 N N
58 CA3 OP C O sing 1.43 N N
59 CA3 HA3 C H sing 1.09 N N
60 CB3 CG1 C C sing 1.51 N N
61 CB3 HB13 C H sing 1.09 N N
62 CB3 HB23 C H sing 1.09 N N
63 CG1 CD11 C C doub 1.38 N Y
64 CG1 CD21 C C sing 1.38 N Y
65 CD11 CE1 C C sing 1.38 N Y
66 CD11 HD1 C H sing 1.08 N N
67 CD21 CE2 C C doub 1.38 N Y
68 CD21 HD2 C H sing 1.08 N N
69 CE1 CZ C C doub 1.38 N Y
70 CE1 HE1 C H sing 1.08 N N
71 CE2 CZ C C sing 1.38 N Y
72 CE2 HE2 C H sing 1.08 N N
73 CZ HZ C H sing 1.08 N N
74 CC OS C O sing 1.34 N N
75 CC O4 C O doub 1.21 N N
76 CS OS C O sing 1.45 N N
77 CS HS1 C H sing 1.09 N N
78 CS HS2 C H sing 1.09 N N
79 CS HS3 C H sing 1.09 N N
80 C1 N C N sing 1.35 N N
81 C N1 C N sing 1.35 N N
82 C9 N2 C N sing 1.35 N N
83 P OP P O sing 1.61 N N