Services
Research
Training
Industry
About us
Protein Data Bank
in Europe
Bringing Structure to Biology
Chemical Components in the PDB
pdbe.org/chem
Feedback
Share
Summary
Atoms
Bonds
In PDB Entries
Names
Descriptors
Complete Listing
Modify Search
Download Links
Molfile:
Ideal
Representative
PDB:
Ideal
Representative
Other:
mmCif
CML
Related compounds
Could not find any related compound in the PDB.
3D-Views
Ideal
Representative
PDB Links
PDB entries
PDBeChem : Chemical Bonds
Molecule :
11D
Bonds between two atoms of the molecule
Total Number of Bonds: 65
50
10 per page
20 per page
Show all
Record
First Atom
Second Atom
First Element
Second Element
Bond Order Type
Bond Length
Bond Stereochemistry
Is Aromatic
1
C2
C1
C
C
doub
1.4
N
Y
2
C1
C6
C
C
sing
1.36
N
Y
3
C1
H1
C
H
sing
1.08
N
N
4
C7
C2
C
C
sing
1.41
N
Y
5
C3
C2
C
C
sing
1.42
N
Y
6
C10
C3
C
C
sing
1.41
N
Y
7
C3
C4
C
C
doub
1.41
N
Y
8
S14
C4
S
C
sing
1.76
N
N
9
C4
C5
C
C
sing
1.36
N
Y
10
C5
C6
C
C
doub
1.39
N
Y
11
C5
H5
C
H
sing
1.08
N
N
12
C6
H6
C
H
sing
1.08
N
N
13
C8
C7
C
C
doub
1.38
N
Y
14
C7
N11
C
N
sing
1.39
N
N
15
C9
C8
C
C
sing
1.39
N
Y
16
C8
H8
C
H
sing
1.08
N
N
17
C9
C10
C
C
doub
1.36
N
Y
18
C9
H9
C
H
sing
1.08
N
N
19
C10
H10
C
H
sing
1.08
N
N
20
C13
N11
C
N
sing
1.47
N
N
21
N11
C12
N
C
sing
1.47
N
N
22
C12
H12
C
H
sing
1.09
N
N
23
C12
H12A
C
H
sing
1.09
N
N
24
C12
H12B
C
H
sing
1.09
N
N
25
C13
H13
C
H
sing
1.09
N
N
26
C13
H13A
C
H
sing
1.09
N
N
27
C13
H13B
C
H
sing
1.09
N
N
28
N17
S14
N
S
sing
1.66
N
N
29
S14
O16
S
O
doub
1.42
N
N
30
S14
O15
S
O
doub
1.42
N
N
31
C18
N17
C
N
sing
1.46
N
N
32
N17
HN17
N
H
sing
0.97
N
N
33
C18
C19
C
C
sing
1.53
N
N
34
C18
H18
C
H
sing
1.09
N
N
35
C18
H18A
C
H
sing
1.09
N
N
36
C20
C19
C
C
sing
1.53
N
N
37
C19
H19
C
H
sing
1.09
N
N
38
C19
H19A
C
H
sing
1.09
N
N
39
C20
C21
C
C
sing
1.53
N
N
40
C20
H20
C
H
sing
1.09
N
N
41
C20
H20A
C
H
sing
1.09
N
N
42
C22
C21
C
C
sing
1.53
N
N
43
C21
H21
C
H
sing
1.09
N
N
44
C21
H21A
C
H
sing
1.09
N
N
45
C23
C22
C
C
sing
1.53
N
N
46
C22
H22
C
H
sing
1.09
N
N
47
C22
H22A
C
H
sing
1.09
N
N
48
C24
C23
C
C
sing
1.53
N
N
49
C23
H23
C
H
sing
1.09
N
N
50
C23
H23A
C
H
sing
1.09
N
N
51
C25
C24
C
C
sing
1.53
N
N
52
C24
H24
C
H
sing
1.09
N
N
53
C24
H24A
C
H
sing
1.09
N
N
54
C26
C25
C
C
sing
1.53
N
N
55
C25
H25
C
H
sing
1.09
N
N
56
C25
H25A
C
H
sing
1.09
N
N
57
C27
C26
C
C
sing
1.53
N
N
58
C26
H26
C
H
sing
1.09
N
N
59
C26
H26A
C
H
sing
1.09
N
N
60
C28
C27
C
C
sing
1.51
N
N
61
C27
H27
C
H
sing
1.09
N
N
62
C27
H27A
C
H
sing
1.09
N
N
63
O29
C28
O
C
doub
1.21
N
N
64
C28
O30
C
O
sing
1.34
N
N
65
O30
HO30
O
H
sing
0.97
N
N