Services
Research
Training
Industry
About us
Protein Data Bank
in Europe
Bringing Structure to Biology
Chemical Components in the PDB
pdbe.org/chem
Feedback
Share
Summary
Atoms
Bonds
In PDB Entries
Names
Descriptors
Complete Listing
Modify Search
Download Links
Molfile:
Ideal
Representative
PDB:
Ideal
Representative
Other:
mmCif
CML
Related compounds
Could not find any related compound in the PDB.
3D-Views
Ideal
Representative
PDB Links
PDB entries
PDBeChem : Chemical Bonds
Molecule :
13V
Bonds between two atoms of the molecule
Total Number of Bonds: 51
50
10 per page
20 per page
Show all
Record
First Atom
Second Atom
First Element
Second Element
Bond Order Type
Bond Length
Bond Stereochemistry
Is Aromatic
1
C20
O3
C
O
sing
1.43
N
N
2
O3
C19
O
C
sing
1.43
N
N
3
C19
C18
C
C
sing
1.53
N
N
4
C18
O2
C
O
sing
1.43
N
N
5
N1
C10
N
C
sing
1.36
N
Y
6
N1
C9
N
C
sing
1.38
N
Y
7
C10
C11
C
C
doub
1.36
N
Y
8
C8
C9
C
C
doub
1.39
N
Y
9
C8
C7
C
C
sing
1.37
N
Y
10
C9
C12
C
C
sing
1.41
N
Y
11
O2
C17
O
C
sing
1.36
N
N
12
C11
C12
C
C
sing
1.47
N
Y
13
C11
C14
C
C
sing
1.48
N
N
14
C7
C6
C
C
doub
1.4
N
Y
15
C17
C14
C
C
doub
1.4
N
Y
16
C17
C16
C
C
sing
1.39
N
Y
17
C12
C13
C
C
doub
1.39
N
Y
18
C14
N2
C
N
sing
1.33
N
Y
19
C16
N4
C
N
doub
1.33
N
Y
20
C6
C13
C
C
sing
1.39
N
Y
21
C6
C5
C
C
sing
1.43
N
N
22
N2
C15
N
C
doub
1.32
N
Y
23
N4
C15
N
C
sing
1.32
N
Y
24
C5
C4
C
C
trip
1.17
N
N
25
C15
N3
C
N
sing
1.39
N
N
26
O1
C1
O
C
sing
1.43
N
N
27
C2
C1
C
C
sing
1.53
N
N
28
C4
C1
C
C
sing
1.47
N
N
29
C1
C3
C
C
sing
1.53
N
N
30
N3
H1
N
H
sing
0.97
N
N
31
N3
H2
N
H
sing
0.97
N
N
32
C16
H3
C
H
sing
1.08
N
N
33
C18
H4
C
H
sing
1.09
N
N
34
C18
H5
C
H
sing
1.09
N
N
35
C19
H6
C
H
sing
1.09
N
N
36
C19
H7
C
H
sing
1.09
N
N
37
C20
H8
C
H
sing
1.09
N
N
38
C20
H9
C
H
sing
1.09
N
N
39
C20
H10
C
H
sing
1.09
N
N
40
C10
H11
C
H
sing
1.08
N
N
41
N1
H12
N
H
sing
0.97
N
N
42
C8
H13
C
H
sing
1.08
N
N
43
C7
H14
C
H
sing
1.08
N
N
44
C13
H15
C
H
sing
1.08
N
N
45
C3
H16
C
H
sing
1.09
N
N
46
C3
H17
C
H
sing
1.09
N
N
47
C3
H18
C
H
sing
1.09
N
N
48
C2
H19
C
H
sing
1.09
N
N
49
C2
H20
C
H
sing
1.09
N
N
50
C2
H21
C
H
sing
1.09
N
N
51
O1
H22
O
H
sing
0.97
N
N