Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 1J9    

Bonds between two atoms of the molecule

Total Number of Bonds: 54


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 C6 C C doub 1.38 N Y
2 C1 C2 C C sing 1.38 N Y
3 C6 C5 C C sing 1.39 N Y
4 C2 C3 C C doub 1.38 N Y
5 N4 C11 N C doub 1.31 N Y
6 N4 C7 N C sing 1.33 N Y
7 C11 N3 C N sing 1.32 N Y
8 C5 N1 C N sing 1.4 N N
9 C5 C4 C C doub 1.39 N Y
10 N3 C10 N C doub 1.33 N Y
11 C7 N1 C N sing 1.37 N Y
12 C7 C8 C C doub 1.41 N Y
13 C3 C4 C C sing 1.38 N Y
14 O3 C15 O C sing 1.43 N N
15 N1 N2 N N sing 1.4 N Y
16 C4 CL2 C CL sing 1.74 N N
17 C10 C8 C C sing 1.41 N Y
18 C10 O1 C O sing 1.35 N N
19 C8 C9 C C sing 1.41 N Y
20 C15 C14 C C sing 1.53 N N
21 N2 C9 N C doub 1.3 N Y
22 O2 C14 O C sing 1.43 N N
23 O2 C13 O C sing 1.43 N N
24 C12 O1 C O sing 1.43 N N
25 C12 C13 C C sing 1.53 N N
26 C12 C16 C C sing 1.51 N N
27 N5 C16 N C sing 1.35 N N
28 N5 C17 N C sing 1.39 N N
29 C16 O4 C O doub 1.21 N N
30 N6 C17 N C doub 1.32 N Y
31 N6 C21 N C sing 1.32 N Y
32 C17 C18 C C sing 1.39 N Y
33 C21 C20 C C doub 1.38 N Y
34 C18 C19 C C doub 1.38 N Y
35 C20 C19 C C sing 1.39 N Y
36 C20 CL1 C CL sing 1.74 N N
37 C1 H1 C H sing 1.08 N N
38 C2 H2 C H sing 1.08 N N
39 C3 H3 C H sing 1.08 N N
40 C6 H4 C H sing 1.08 N N
41 C9 H5 C H sing 1.08 N N
42 C11 H6 C H sing 1.08 N N
43 C12 H7 C H sing 1.09 N N
44 C13 H8 C H sing 1.09 N N
45 C13 H9 C H sing 1.09 N N
46 C14 H10 C H sing 1.09 N N
47 C14 H11 C H sing 1.09 N N
48 C15 H12 C H sing 1.09 N N
49 C15 H13 C H sing 1.09 N N
50 O3 H14 O H sing 0.97 N N
51 N5 H15 N H sing 0.97 N N
52 C18 H16 C H sing 1.08 N N
53 C19 H17 C H sing 1.08 N N
54 C21 H18 C H sing 1.08 N N