Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 1PR    

Bonds between two atoms of the molecule

Total Number of Bonds: 67


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O9' P7' O P sing 1.61 N N
2 O9' H9' O H sing 0.97 N N
3 O8' P7' O P sing 1.61 N N
4 O8' H8' O H sing 0.97 N N
5 O'1 P7' O P doub 1.48 N N
6 O6' C5' O C sing 1.43 N N
7 O6' P7' O P sing 1.61 N N
8 C5' C4' C C sing 1.53 N N
9 C5' H5'1 C H sing 1.09 N N
10 C5' H5'2 C H sing 1.09 N N
11 C4' O4' C O sing 1.44 N N
12 C4' C3' C C sing 1.55 N N
13 C4' H4' C H sing 1.09 N N
14 O4' C1' O C sing 1.44 N N
15 C3' O3' C O sing 1.43 N N
16 C3' C2' C C sing 1.55 N N
17 C3' H3' C H sing 1.09 N N
18 O3' HO3' O H sing 0.97 N N
19 C2' O2' C O sing 1.43 N N
20 C2' C1' C C sing 1.55 N N
21 C2' H2' C H sing 1.09 N N
22 O2' HO2' O H sing 0.97 N N
23 C1' N1 C N sing 1.47 N N
24 C1' H1' C H sing 1.09 N N
25 N1 C2 N C sing 1.36 N Y
26 N1 C5 N C sing 1.36 N Y
27 C2 N3 C N doub 1.3 N Y
28 C2 H2 C H sing 1.08 N N
29 N3 C4 N C sing 1.36 N Y
30 C4 C9 C C sing 1.46 N N
31 C4 C5 C C doub 1.39 N Y
32 C9 O9 C O doub 1.22 N N
33 C9 N9 C N sing 1.35 N N
34 N9 HN91 N H sing 0.97 N N
35 N9 HN92 N H sing 0.97 N N
36 N6 C5 N C sing 1.38 N N
37 N6 C7 N C sing 1.47 N N
38 N6 HN6 N H sing 1.01 N N
39 C7 N8 C N sing 1.47 N N
40 C7 H71 C H sing 1.09 N N
41 C7 H72 C H sing 1.09 N N
42 C1B C2B C C sing 1.53 N N
43 C1B N8 C N sing 1.47 N N
44 C1B H'1 C H sing 1.09 N N
45 C1B H'2 C H sing 1.09 N N
46 C2B C3B C C sing 1.53 N N
47 C2B O2B C O sing 1.43 N N
48 C2B H2B C H sing 1.09 N N
49 C3B C4B C C sing 1.53 N N
50 C3B O3B C O sing 1.43 N N
51 C3B H3B C H sing 1.09 N N
52 C4B C5B C C sing 1.53 N N
53 C4B O4B C O sing 1.43 N N
54 C4B H4B C H sing 1.09 N N
55 C5B O6B C O sing 1.43 N N
56 C5B H5A1 C H sing 1.09 N N
57 C5B H5A2 C H sing 1.09 N N
58 N8 HN8 N H sing 1.01 N N
59 O2B HO2 O H sing 0.97 N N
60 O3B HO3 O H sing 0.97 N N
61 O4B HO4 O H sing 0.97 N N
62 O6B P7B O P sing 1.61 N N
63 P7B O'L P O doub 1.48 N N
64 P7B O8B P O sing 1.61 N N
65 P7B O9B P O sing 1.61 N N
66 O8B H8B O H sing 0.97 N N
67 O9B H9B O H sing 0.97 N N