Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 25S    

Bonds between two atoms of the molecule

Total Number of Bonds: 78


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O1 C5 O C doub 1.21 N N
2 C5 N1 C N sing 1.35 N N
3 C5 C6 C C sing 1.51 N N
4 N1 C4 N C sing 1.4 N N
5 C4 C3 C C doub 1.39 N Y
6 C4 C C C sing 1.39 N Y
7 C3 C2 C C sing 1.38 N Y
8 C2 N C N doub 1.32 N Y
9 N C1 N C sing 1.32 N Y
10 C1 C C C doub 1.38 N Y
11 C6 C24 C C sing 1.53 N N
12 C6 N2 C N sing 1.46 N N
13 C24 C25 C C sing 1.51 N N
14 C25 C28 C C sing 1.46 N Y
15 C25 C26 C C doub 1.34 N Y
16 C28 C29 C C sing 1.4 N Y
17 C28 C27 C C doub 1.41 N Y
18 C29 C30 C C doub 1.37 N Y
19 C30 C31 C C sing 1.39 N Y
20 C31 C32 C C doub 1.38 N Y
21 C32 C27 C C sing 1.39 N Y
22 C27 N5 C N sing 1.38 N Y
23 N5 C26 N C sing 1.37 N Y
24 N2 C7 N C sing 1.35 N N
25 C7 O C O doub 1.22 N N
26 C7 C8 C C sing 1.47 N N
27 C8 C23 C C sing 1.4 N Y
28 C8 C9 C C doub 1.4 N Y
29 C23 F2 C F sing 1.35 N N
30 C23 C22 C C doub 1.38 N Y
31 C22 C11 C C sing 1.39 N Y
32 C11 C10 C C doub 1.39 N Y
33 C11 N3 C N sing 1.39 N N
34 C10 C9 C C sing 1.37 N Y
35 N3 C21 N C sing 1.47 N N
36 N3 C12 N C sing 1.47 N N
37 C21 C20 C C sing 1.53 N N
38 C20 N4 C N sing 1.47 N N
39 N4 C13 N C sing 1.47 N N
40 N4 C14 N C sing 1.4 N N
41 C13 C12 C C sing 1.53 N N
42 C14 C19 C C sing 1.39 N Y
43 C14 C15 C C doub 1.39 N Y
44 C19 C18 C C doub 1.38 N Y
45 C18 C17 C C sing 1.38 N Y
46 C17 F1 C F sing 1.35 N N
47 C17 C16 C C doub 1.39 N Y
48 C16 F C F sing 1.35 N N
49 C16 C15 C C sing 1.38 N Y
50 N1 H1 N H sing 0.97 N N
51 C6 H6 C H sing 1.09 N N
52 C3 H3 C H sing 1.08 N N
53 C H C H sing 1.08 N N
54 C2 H2 C H sing 1.08 N N
55 C1 HA C H sing 1.08 N N
56 C24 H241 C H sing 1.09 N N
57 C24 H242 C H sing 1.09 N N
58 N2 HB N H sing 0.97 N N
59 C26 H26 C H sing 1.08 N N
60 C29 H29 C H sing 1.08 N N
61 C30 H30 C H sing 1.08 N N
62 C31 H31 C H sing 1.08 N N
63 C32 H32 C H sing 1.08 N N
64 N5 H5 N H sing 0.97 N N
65 C9 H9 C H sing 1.08 N N
66 C22 H22 C H sing 1.08 N N
67 C10 H10 C H sing 1.08 N N
68 C21 H211 C H sing 1.09 N N
69 C21 H212 C H sing 1.09 N N
70 C12 H121 C H sing 1.09 N N
71 C12 H122 C H sing 1.09 N N
72 C20 H201 C H sing 1.09 N N
73 C20 H202 C H sing 1.09 N N
74 C13 H131 C H sing 1.09 N N
75 C13 H132 C H sing 1.09 N N
76 C19 H19 C H sing 1.08 N N
77 C15 H15 C H sing 1.08 N N
78 C18 H18 C H sing 1.08 N N