Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 26Y    

Bonds between two atoms of the molecule

Total Number of Bonds: 51


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O3' C3' O C sing 1.43 N N
2 O4' C4' O C sing 1.43 N N
3 C3' C4' C C sing 1.53 N N
4 C3' C2' C C sing 1.53 N N
5 C4' C5' C C sing 1.53 N N
6 O2' C2' O C sing 1.43 N N
7 C2' C1' C C sing 1.53 N N
8 O6' C6' O C sing 1.43 N N
9 C5' C6' C C sing 1.53 N N
10 C5' O5' C O sing 1.43 N N
11 C1' O5' C O sing 1.43 N N
12 C1' N1 C N sing 1.47 N N
13 N1 C2 N C sing 1.35 N N
14 C2 O3 C O doub 1.22 N N
15 C2 C4 C C sing 1.47 N N
16 C4 C6 C C doub 1.35 E N
17 C8 C9 C C doub 1.38 N Y
18 C8 C7 C C sing 1.4 N Y
19 C6 C7 C C sing 1.47 N N
20 C9 C10 C C sing 1.38 N Y
21 C7 C12 C C doub 1.4 N Y
22 C10 C13 C C sing 1.51 N N
23 C10 C11 C C doub 1.38 N Y
24 C12 C11 C C sing 1.38 N Y
25 C13 C14 C C sing 1.53 N N
26 C13 C15 C C sing 1.53 N N
27 C14 H1 C H sing 1.09 N N
28 C14 H2 C H sing 1.09 N N
29 C14 H3 C H sing 1.09 N N
30 C13 H4 C H sing 1.09 N N
31 C15 H5 C H sing 1.09 N N
32 C15 H6 C H sing 1.09 N N
33 C15 H7 C H sing 1.09 N N
34 C9 H8 C H sing 1.08 N N
35 C8 H9 C H sing 1.08 N N
36 C11 H10 C H sing 1.08 N N
37 C12 H11 C H sing 1.08 N N
38 C6 H12 C H sing 1.08 N N
39 C4 H13 C H sing 1.08 N N
40 N1 H14 N H sing 0.97 N N
41 C1' H15 C H sing 1.09 N N
42 C5' H16 C H sing 1.09 N N
43 C6' H17 C H sing 1.09 N N
44 C6' H18 C H sing 1.09 N N
45 O6' H19 O H sing 0.97 N N
46 C4' H20 C H sing 1.09 N N
47 O4' H21 O H sing 0.97 N N
48 C3' H22 C H sing 1.09 N N
49 O3' H23 O H sing 0.97 N N
50 C2' H24 C H sing 1.09 N N
51 O2' H25 O H sing 0.97 N N