Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 2A5    

Bonds between two atoms of the molecule

Total Number of Bonds: 50


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 PA O2A P O sing 1.61 N N
2 O2A HO2A O H sing 0.97 N N
3 O1A PA O P doub 1.48 N N
4 PA O3A P O sing 1.61 N N
5 PA O5' P O sing 1.61 N N
6 PB O3A P O sing 1.61 N N
7 O3B PB O P doub 1.48 N N
8 O2B PB O P sing 1.61 N N
9 PB O1B P O sing 1.61 N N
10 O2B HO2B O H sing 0.97 N N
11 O1B HO1B O H sing 0.97 N N
12 O5' C5' O C sing 1.43 N N
13 C5' C4' C C sing 1.53 N N
14 C5' H5' C H sing 1.09 N N
15 C5' H5'A C H sing 1.09 N N
16 O4' C4' O C sing 1.44 N N
17 C3' C4' C C sing 1.54 N N
18 C4' H4' C H sing 1.09 N N
19 C1' O4' C O sing 1.44 N N
20 N9 C1' N C sing 1.46 N N
21 C1' C2' C C sing 1.55 N N
22 C1' H1' C H sing 1.09 N N
23 C2' C3' C C sing 1.55 N N
24 C2' C01 C C sing 1.53 N N
25 C2' H2' C H sing 1.09 N N
26 C01 C02 C C sing 1.53 N N
27 C01 H01 C H sing 1.09 N N
28 C01 H01A C H sing 1.09 N N
29 C02 O01 C O sing 1.43 N N
30 C02 H02 C H sing 1.09 N N
31 C02 H02A C H sing 1.09 N N
32 O01 HO01 O H sing 0.97 N N
33 C3' O3' C O sing 1.43 N N
34 C3' H3' C H sing 1.09 N N
35 O3' HO3' O H sing 0.97 N N
36 C8 N9 C N sing 1.36 N Y
37 C4 N9 C N sing 1.37 N Y
38 N7 C8 N C doub 1.3 N Y
39 C8 H8 C H sing 1.08 N N
40 N7 C5 N C sing 1.35 N Y
41 C6 C5 C C doub 1.4 N Y
42 C5 C4 C C sing 1.4 N Y
43 C4 N3 C N doub 1.33 N Y
44 N6 C6 N C sing 1.38 N N
45 C6 N1 C N sing 1.33 N Y
46 N6 HN6 N H sing 0.97 N N
47 N6 HN6A N H sing 0.97 N N
48 N1 C2 N C doub 1.32 N Y
49 C2 N3 C N sing 1.32 N Y
50 C2 H2 C H sing 1.08 N N