Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 2DS    

Bonds between two atoms of the molecule

Total Number of Bonds: 54


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 C16 C C sing 1.4 N Y
2 N1 C22 N C sing 1.46 N N
3 N1 HN1 N H sing 0.97 N N
4 O1 C1 O C sing 1.36 N N
5 O1 HO1 O H sing 0.97 N N
6 C3 O3 C O sing 1.36 N N
7 C3 C18 C C sing 1.4 N Y
8 N3 C24 N C sing 1.47 N N
9 N3 HN3 N H sing 0.97 N N
10 O3 HO3 O H sing 0.97 N N
11 C4 C1 C C doub 1.39 N Y
12 C4 C7 C C sing 1.39 N Y
13 O4 C4 O C sing 1.36 N N
14 O4 HO4 O H sing 0.97 N N
15 C6 C3 C C doub 1.39 N Y
16 O6 C6 O C sing 1.36 N N
17 O6 HO6 O H sing 0.97 N N
18 C7 C10 C C doub 1.38 N Y
19 C7 H7 C H sing 1.08 N N
20 C9 C6 C C sing 1.38 N Y
21 C9 C12 C C doub 1.39 N Y
22 C9 H9 C H sing 1.08 N N
23 C10 C13 C C sing 1.38 N Y
24 C10 H10 C H sing 1.08 N N
25 O10 C25 O C doub 1.21 N N
26 C12 C15 C C sing 1.38 N Y
27 C12 H12 C H sing 1.08 N N
28 C13 H13 C H sing 1.08 N N
29 O14 HO14 O H sing 0.97 N N
30 C15 C18 C C doub 1.4 N Y
31 C15 H15 C H sing 1.08 N N
32 C16 C13 C C doub 1.4 N Y
33 C16 C19 C C sing 1.48 N N
34 C18 C21 C C sing 1.48 N N
35 C19 N1 C N sing 1.35 N N
36 C19 O7 C O doub 1.22 N N
37 C21 N3 C N sing 1.35 N N
38 C21 O9 C O doub 1.22 N N
39 C22 C25 C C sing 1.51 N N
40 C22 C20 C C sing 1.53 N N
41 C22 H22 C H sing 1.09 N N
42 C24 C30 C C sing 1.53 N N
43 C24 C27 C C sing 1.51 N N
44 C24 H24 C H sing 1.09 N N
45 C25 O15 C O sing 1.34 N N
46 C27 O12 C O doub 1.21 N N
47 C27 O14 C O sing 1.34 N N
48 C30 O15 C O sing 1.45 N N
49 C30 H30 C H sing 1.09 N N
50 C30 H30A C H sing 1.09 N N
51 C20 O11 C O sing 1.43 N N
52 C20 H18 C H sing 1.09 N N
53 C20 H19 C H sing 1.09 N N
54 O11 H20 O H sing 0.97 N N