Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 2ER    

Bonds between two atoms of the molecule

Total Number of Bonds: 63


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C5 N1 C N sing 1.36 N Y
2 C2 N1 C N sing 1.36 N Y
3 N1 C1' N C sing 1.47 N N
4 N3 C2 N C doub 1.3 N Y
5 C2 H2 C H sing 1.08 N N
6 C4 N3 C N sing 1.36 N Y
7 C9 C4 C C sing 1.47 N N
8 C4 C5 C C doub 1.39 N Y
9 C5 N6 C N sing 1.38 N N
10 C7 N6 C N sing 1.37 N N
11 N6 HN6 N H sing 0.97 N N
12 C7 N8 C N doub 1.29 N N
13 C7 H7 C H sing 1.08 N N
14 N8 C1B N C sing 1.47 N N
15 N9 C9 N C sing 1.35 N N
16 O9 C9 O C doub 1.22 N N
17 N9 HN9 N H sing 0.97 N N
18 N9 HN9A N H sing 0.97 N N
19 O'1 P7' O P doub 1.48 N N
20 O'L P7B O P doub 1.48 N N
21 C1' C2' C C sing 1.55 N N
22 C1' O4' C O sing 1.44 N N
23 C1' H1' C H sing 1.09 N N
24 C1B C2'' C C sing 1.51 N N
25 C1B H1B C H sing 1.09 N N
26 C1B H1BA C H sing 1.09 N N
27 C3'' C2'' C C sing 1.51 N N
28 C2'' O2B C O doub 1.21 N N
29 O2' C2' O C sing 1.43 N N
30 C2' C3' C C sing 1.55 N N
31 C2' H2' C H sing 1.09 N N
32 O2' HO2' O H sing 0.97 N N
33 O3B C3'' O C sing 1.43 N N
34 C3'' C4B C C sing 1.53 N N
35 C3'' H3'' C H sing 1.09 N N
36 C4' C3' C C sing 1.54 N N
37 C3' O3' C O sing 1.43 N N
38 C3' H3' C H sing 1.09 N N
39 O3' HO3' O H sing 0.97 N N
40 O3B HO3B O H sing 0.97 N N
41 O4' C4' O C sing 1.44 N N
42 C4' C5' C C sing 1.53 N N
43 C4' H4' C H sing 1.09 N N
44 C5B C4B C C sing 1.53 N N
45 O4B C4B O C sing 1.43 N N
46 C4B H4B C H sing 1.09 N N
47 O4B HO4B O H sing 0.97 N N
48 C5' O6' C O sing 1.43 N N
49 C5' H5' C H sing 1.09 N N
50 C5' H5'A C H sing 1.09 N N
51 O6B C5B O C sing 1.43 N N
52 C5B H5B C H sing 1.09 N N
53 C5B H5BA C H sing 1.09 N N
54 O6' P7' O P sing 1.61 N N
55 P7B O6B P O sing 1.61 N N
56 O8' P7' O P sing 1.61 N N
57 P7' O9' P O sing 1.61 N N
58 O8B P7B O P sing 1.61 N N
59 P7B O9B P O sing 1.61 N N
60 O8' HO8' O H sing 0.97 N N
61 O8B HO8B O H sing 0.97 N N
62 O9' HO9' O H sing 0.97 N N
63 O9B HO9B O H sing 0.97 N N