Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : 2J1    

Bonds between two atoms of the molecule

Total Number of Bonds: 31


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O1 C13 O C doub 1.22 N N
2 C13 O2 C O sing 1.35 N N
3 C13 C12 C C sing 1.47 N N
4 C11 C12 C C doub 1.39 N Y
5 C11 C4 C C sing 1.39 N Y
6 C12 C1 C C sing 1.4 N Y
7 C4 N C N sing 1.38 N Y
8 C4 C3 C C doub 1.41 N Y
9 N C5 N C sing 1.36 N Y
10 C1 CL C CL sing 1.74 N N
11 C1 C2 C C doub 1.36 N Y
12 C5 C10 C C sing 1.51 N N
13 C5 C6 C C doub 1.35 N Y
14 C3 C2 C C sing 1.4 N Y
15 C3 C6 C C sing 1.46 N Y
16 C10 C9 C C sing 1.53 N N
17 C6 C7 C C sing 1.51 N N
18 C9 C8 C C sing 1.53 N N
19 C7 C8 C C sing 1.53 N N
20 C2 H1 C H sing 1.08 N N
21 C7 H2 C H sing 1.09 N N
22 C7 H3 C H sing 1.09 N N
23 C8 H4 C H sing 1.09 N N
24 C8 H5 C H sing 1.09 N N
25 C9 H6 C H sing 1.09 N N
26 C9 H7 C H sing 1.09 N N
27 C10 H8 C H sing 1.09 N N
28 C10 H9 C H sing 1.09 N N
29 N H10 N H sing 0.97 N N
30 C11 H11 C H sing 1.08 N N
31 O2 H12 O H sing 0.97 N N