Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 2JU    

Bonds between two atoms of the molecule

Total Number of Bonds: 59


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O2 C2 O C doub 1.22 N N
2 C26 C27 C C doub 1.36 N Y
3 C26 C25 C C sing 1.39 N Y
4 N3 C2 N C sing 1.34 N N
5 N3 C4 N C sing 1.35 N N
6 C2 N1 C N sing 1.34 N N
7 C27 C28 C C sing 1.41 N Y
8 O4 C4 O C doub 1.22 N N
9 C2' C1' C C sing 1.54 N N
10 C2' C3' C C sing 1.55 N N
11 C4 C5 C C sing 1.47 N N
12 C25 C24 C C doub 1.36 N Y
13 N1 C1' N C sing 1.47 N N
14 N1 C6 N C sing 1.36 N N
15 C1' O4' C O sing 1.45 N N
16 C5 C6 C C doub 1.38 N N
17 C5 C5M C C sing 1.47 N N
18 O3' C3' O C sing 1.43 N N
19 C3' C4' C C sing 1.54 N N
20 C28 C33 C C doub 1.4 N Y
21 C28 C29 C C sing 1.42 N Y
22 C33 C32 C C sing 1.36 N Y
23 C24 C29 C C sing 1.4 N Y
24 C24 C23 C C sing 1.51 N N
25 C5M N22 C N sing 1.35 N N
26 C5M O21 C O doub 1.22 N N
27 N22 C23 N C sing 1.47 N N
28 C29 C30 C C doub 1.41 N Y
29 O4' C4' O C sing 1.44 N N
30 C4' C5' C C sing 1.53 N N
31 O5' C5' O C sing 1.43 N N
32 O5' P O P sing 1.61 N N
33 C32 C31 C C doub 1.39 N Y
34 C30 C31 C C sing 1.36 N Y
35 O2P P O P sing 1.61 N N
36 P O1P P O doub 1.48 N N
37 O2P H2 O H sing 0.97 N N
38 C5' H3 C H sing 1.09 N N
39 C5' H4 C H sing 1.09 N N
40 C4' H5 C H sing 1.09 N N
41 C3' H6 C H sing 1.09 N N
42 C2' H7 C H sing 1.09 N N
43 C2' H8 C H sing 1.09 N N
44 C1' H9 C H sing 1.09 N N
45 C6 H10 C H sing 1.08 N N
46 N3 H11 N H sing 0.97 N N
47 N22 H12 N H sing 0.97 N N
48 C23 H13 C H sing 1.09 N N
49 C23 H14 C H sing 1.09 N N
50 C30 H15 C H sing 1.08 N N
51 C31 H16 C H sing 1.08 N N
52 C32 H17 C H sing 1.08 N N
53 C33 H18 C H sing 1.08 N N
54 C27 H19 C H sing 1.08 N N
55 C26 H20 C H sing 1.08 N N
56 C25 H21 C H sing 1.08 N N
57 O3' H22 O H sing 0.97 N N
58 P O3P P O sing 1.61 N N
59 O3P H1 O H sing 0.97 N N