Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 2MX    

Bonds between two atoms of the molecule

Total Number of Bonds: 142


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C O C O sing 1.34 N N
2 N HN N H sing 0.97 N N
3 O HO O H sing 0.97 N N
4 N1 C2 N C sing 1.32 N Y
5 C2 N2 C N sing 1.38 N N
6 C2 N3 C N doub 1.33 N Y
7 N2 HN2 N H sing 0.97 N N
8 N2 HN2A N H sing 0.97 N N
9 C4 N3 C N sing 1.33 N Y
10 C4 N4 C N sing 1.38 N N
11 N4 HN4 N H sing 0.97 N N
12 N4 HN4A N H sing 0.97 N N
13 N5 C4A N C sing 1.33 N Y
14 C6 N5 C N doub 1.32 N Y
15 C7 C6 C C sing 1.4 N Y
16 C7 N8 C N doub 1.32 N Y
17 C7 H7 C H sing 1.08 N N
18 N8 C8A N C sing 1.33 N Y
19 C9 C6 C C sing 1.51 N N
20 C9 H9 C H sing 1.09 N N
21 C9 H9A C H sing 1.09 N N
22 CA C C C sing 1.51 N N
23 CA N C N sing 1.47 N N
24 CA HA C H sing 1.09 N N
25 CB CA C C sing 1.53 N N
26 CB HB C H sing 1.09 N N
27 CB HBA C H sing 1.09 N N
28 CD CG C C sing 1.51 N N
29 CG CB C C sing 1.53 N N
30 CG HG C H sing 1.09 N N
31 CG HGA C H sing 1.09 N N
32 N10 C9 N C sing 1.46 N N
33 C4A C4 C C doub 1.46 N Y
34 C8A N1 C N doub 1.34 N Y
35 C8A C4A C C sing 1.42 N Y
36 CAA N10 C N sing 1.46 N N
37 CAA HAA C H sing 1.09 N N
38 CAA HAAA C H sing 1.09 N N
39 CAA HAAB C H sing 1.09 N N
40 CAB HAB C H sing 1.09 N N
41 CAB HABA C H sing 1.09 N N
42 CAB HABB C H sing 1.09 N N
43 NAD CCG N C sing 1.38 N N
44 NAD HNAD N H sing 0.97 N N
45 NAD HNAA N H sing 0.97 N N
46 NAF CCI N C sing 1.38 N N
47 NAF HNAF N H sing 0.97 N N
48 NAF HNAB N H sing 0.97 N N
49 OAH CCA O C doub 1.21 N N
50 OAJ CCC O C sing 1.34 N N
51 OAJ HOAJ O H sing 0.97 N N
52 OAK CCD O C doub 1.22 N N
53 OAN CCC O C doub 1.21 N N
54 CAO CAS C C sing 1.38 N Y
55 CAO HAO C H sing 1.08 N N
56 CAP CCL C C sing 1.4 N Y
57 CAP CAT C C doub 1.38 N Y
58 CAP HAP C H sing 1.08 N N
59 CAQ CCM C C sing 1.4 N Y
60 CAQ HAQ C H sing 1.08 N N
61 CAR HAR C H sing 1.08 N N
62 CAS HAS C H sing 1.08 N N
63 CAT CCN C C sing 1.39 N Y
64 CAT HAT C H sing 1.08 N N
65 CAU CAQ C C doub 1.38 N Y
66 CAU CCO C C sing 1.39 N Y
67 CAU HAU C H sing 1.08 N N
68 CAV CAR C C sing 1.38 N Y
69 CAV HAV C H sing 1.08 N N
70 CAX HAX C H sing 1.08 N N
71 CAY CAZ C C sing 1.53 N N
72 CAY HAY C H sing 1.09 N N
73 CAY HAYA C H sing 1.09 N N
74 CAZ CBB C C sing 1.53 N N
75 CAZ HAZ C H sing 1.09 N N
76 CAZ HAZA C H sing 1.09 N N
77 CBA CAY C C sing 1.53 N N
78 CBA HBAA C H sing 1.09 N N
79 CBA HBAB C H sing 1.09 N N
80 CBB CBD C C sing 1.53 N N
81 CBB HBB C H sing 1.09 N N
82 CBB HBBA C H sing 1.09 N N
83 CBC CBA C C sing 1.53 N N
84 CBC HBC C H sing 1.09 N N
85 CBC HBCA C H sing 1.09 N N
86 CBD CBF C C sing 1.53 N N
87 CBD HBD C H sing 1.09 N N
88 CBD HBDA C H sing 1.09 N N
89 CBE CBC C C sing 1.53 N N
90 CBE CBG C C sing 1.53 N N
91 CBE HBE C H sing 1.09 N N
92 CBE HBEA C H sing 1.09 N N
93 CBF NE2 C N sing 1.47 N N
94 CBF HBF C H sing 1.09 N N
95 CBF HBFA C H sing 1.09 N N
96 CBG HBG C H sing 1.09 N N
97 CBI CCA C C sing 1.51 N N
98 CBI HBI C H sing 1.09 N N
99 CBI HBIA C H sing 1.09 N N
100 CBK CBI C C sing 1.53 N N
101 CBK HBK C H sing 1.09 N N
102 CBK HBKA C H sing 1.09 N N
103 CBM CCK C C sing 1.51 N N
104 CBM NCW C N sing 1.47 N N
105 CBM HBM C H sing 1.09 N N
106 CBM HBMA C H sing 1.09 N N
107 NBO CAX N C sing 1.32 N Y
108 NBQ CCG N C sing 1.33 N Y
109 NBS CCQ N C sing 1.34 N Y
110 NBU CCK N C sing 1.32 N Y
111 NBW CBG N C sing 1.46 N N
112 NBY CCE N C sing 1.35 N N
113 NBY HNBY N H sing 0.97 N N
114 CCA NBW C N sing 1.35 N N
115 CCC CCU C C sing 1.51 N N
116 CCD N C N sing 1.35 N N
117 CCD CCL C C sing 1.48 N N
118 CCE OAL C O doub 1.22 N N
119 CCG NBS C N doub 1.32 N Y
120 CCI NBQ C N doub 1.33 N Y
121 CCI CCS C C sing 1.46 N Y
122 CCK CAX C C doub 1.39 N Y
123 CCL CAO C C doub 1.4 N Y
124 CCM CAR C C doub 1.4 N Y
125 CCM CCE C C sing 1.48 N N
126 CCN N10 C N sing 1.39 N N
127 CCN CAS C C doub 1.39 N Y
128 CCO CAV C C doub 1.39 N Y
129 CCQ NBO C N doub 1.34 N Y
130 CCS NBU C N doub 1.33 N Y
131 CCS CCQ C C sing 1.42 N Y
132 CCU CBK C C sing 1.53 N N
133 CCU NBY C N sing 1.46 N N
134 CCU HCU C H sing 1.09 N N
135 NCW CAB N C sing 1.46 N N
136 NCW CCO N C sing 1.39 N N
137 OE1 CD O C doub 1.21 N N
138 NE2 CD N C sing 1.35 N N
139 NE2 HNE2 N H sing 0.97 N N
140 OXT C O C doub 1.21 N N
141 CBG H61 C H sing 1.09 N N
142 NBW H62 N H sing 0.97 N N