Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : 2SM    

Bonds between two atoms of the molecule

Total Number of Bonds: 39


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C24 O23 C O sing 1.45 N N
2 O23 C22 O C sing 1.35 N N
3 C22 O25 C O doub 1.22 N N
4 C22 C4 C C sing 1.48 N N
5 C4 C3 C C doub 1.4 N Y
6 C4 C5 C C sing 1.4 N Y
7 C3 C2 C C sing 1.38 N Y
8 C2 C1 C C doub 1.38 N Y
9 C1 C6 C C sing 1.38 N Y
10 C6 C5 C C doub 1.38 N Y
11 C5 S7 C S sing 1.76 N N
12 S7 O18 S O doub 1.42 N N
13 S7 O17 S O doub 1.42 N N
14 S7 N8 S N sing 1.66 N N
15 N8 C9 N C sing 1.35 N N
16 C9 O20 C O doub 1.22 N N
17 C9 N10 C N sing 1.35 N N
18 N10 C11 N C sing 1.39 N N
19 C11 N12 C N doub 1.32 N Y
20 C11 N16 C N sing 1.32 N Y
21 N12 C13 N C sing 1.32 N Y
22 C13 C28 C C sing 1.51 N N
23 C13 C14 C C doub 1.39 N Y
24 C14 C15 C C sing 1.39 N Y
25 C15 N16 C N doub 1.32 N Y
26 C24 H24 C H sing 1.09 N N
27 C24 H24A C H sing 1.09 N N
28 C24 H24B C H sing 1.09 N N
29 C3 H3 C H sing 1.08 N N
30 C2 H2 C H sing 1.08 N N
31 C1 H1 C H sing 1.08 N N
32 C6 H6 C H sing 1.08 N N
33 N8 HN8 N H sing 0.97 N N
34 N10 HN10 N H sing 0.97 N N
35 C28 H28 C H sing 1.09 N N
36 C28 H28A C H sing 1.09 N N
37 C28 H28B C H sing 1.09 N N
38 C14 H14 C H sing 1.08 N N
39 C15 H15 C H sing 1.08 N N