Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 2Y5    

Bonds between two atoms of the molecule

Total Number of Bonds: 149


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C16 C15 C C doub 1.31 Z N
2 C16 C17 C C sing 1.51 N N
3 C30 C29 C C sing 1.53 N N
4 C15 C14 C C sing 1.51 N N
5 C18 C17 C C sing 1.51 N N
6 C18 C19 C C doub 1.31 Z N
7 C28 C29 C C sing 1.53 N N
8 C28 C27 C C sing 1.53 N N
9 C19 C20 C C sing 1.51 N N
10 C14 C13 C C sing 1.53 N N
11 C27 C26 C C sing 1.53 N N
12 C13 C12 C C sing 1.53 N N
13 C26 C25 C C sing 1.51 N N
14 C20 C21 C C sing 1.51 N N
15 O17 C10 O C doub 1.21 N N
16 C21 C22 C C doub 1.31 Z N
17 C23 C22 C C sing 1.51 N N
18 C23 C24 C C sing 1.51 N N
19 C12 C10 C C sing 1.51 N N
20 C25 C24 C C doub 1.31 Z N
21 C35 C36 C C sing 1.53 N N
22 C35 C34 C C sing 1.53 N N
23 C36 C37 C C sing 1.53 N N
24 C10 O16 C O sing 1.34 N N
25 C38 C37 C C sing 1.53 N N
26 C38 C39 C C sing 1.53 N N
27 C33 C34 C C sing 1.53 N N
28 C33 C32 C C sing 1.53 N N
29 C42 C43 C C sing 1.53 N N
30 C42 C41 C C sing 1.53 N N
31 C44 C45 C C sing 1.53 N N
32 C44 C43 C C sing 1.53 N N
33 C45 C46 C C sing 1.53 N N
34 C40 C39 C C sing 1.53 N N
35 C40 C41 C C sing 1.53 N N
36 C31 C32 C C sing 1.53 N N
37 C31 C11 C C sing 1.51 N N
38 O16 C8 O C sing 1.45 N N
39 O18 C11 O C sing 1.34 N N
40 O18 C9 O C sing 1.45 N N
41 C8 C9 C C sing 1.53 N N
42 C8 C7 C C sing 1.53 N N
43 C11 O19 C O doub 1.21 N N
44 C47 C46 C C sing 1.53 N N
45 C7 O13 C O sing 1.43 N N
46 O13 P1 O P sing 1.61 N N
47 O5 C5 O C sing 1.43 N N
48 O6 C6 O C sing 1.43 N N
49 O43 P4 O P doub 1.48 N N
50 C6 C5 C C sing 1.53 N N
51 C6 C1 C C sing 1.53 N N
52 C5 C4 C C sing 1.53 N N
53 P1 O1 P O sing 1.61 N N
54 P1 O11 P O doub 1.48 N N
55 P1 O12 P O sing 1.61 N N
56 O1 C1 O C sing 1.43 N N
57 C1 C2 C C sing 1.53 N N
58 P4 O42 P O sing 1.61 N N
59 P4 O4 P O sing 1.61 N N
60 P4 O41 P O sing 1.61 N N
61 C4 O4 C O sing 1.43 N N
62 C4 C3 C C sing 1.53 N N
63 C2 C3 C C sing 1.53 N N
64 C2 O2 C O sing 1.43 N N
65 C3 O3 C O sing 1.43 N N
66 C1 H1 C H sing 1.09 N N
67 C2 H2 C H sing 1.09 N N
68 O2 H3 O H sing 0.97 N N
69 C3 H4 C H sing 1.09 N N
70 O3 H5 O H sing 0.97 N N
71 C4 H6 C H sing 1.09 N N
72 C5 H7 C H sing 1.09 N N
73 O5 H8 O H sing 0.97 N N
74 C6 H9 C H sing 1.09 N N
75 O6 H10 O H sing 0.97 N N
76 C7 H11 C H sing 1.09 N N
77 C7 H12 C H sing 1.09 N N
78 C8 H13 C H sing 1.09 N N
79 C9 H14 C H sing 1.09 N N
80 C9 H15 C H sing 1.09 N N
81 C12 H16 C H sing 1.09 N N
82 C12 H17 C H sing 1.09 N N
83 O12 H18 O H sing 0.97 N N
84 C13 H19 C H sing 1.09 N N
85 C13 H20 C H sing 1.09 N N
86 C14 H21 C H sing 1.09 N N
87 C14 H22 C H sing 1.09 N N
88 C15 H23 C H sing 1.08 N N
89 C16 H25 C H sing 1.08 N N
90 C17 H27 C H sing 1.09 N N
91 C17 H28 C H sing 1.09 N N
92 C18 H29 C H sing 1.08 N N
93 C19 H31 C H sing 1.08 N N
94 C20 H33 C H sing 1.09 N N
95 C20 H34 C H sing 1.09 N N
96 C21 H35 C H sing 1.08 N N
97 C22 H37 C H sing 1.08 N N
98 C23 H39 C H sing 1.09 N N
99 C23 H40 C H sing 1.09 N N
100 C24 H41 C H sing 1.08 N N
101 C25 H43 C H sing 1.08 N N
102 C26 H45 C H sing 1.09 N N
103 C26 H46 C H sing 1.09 N N
104 C27 H47 C H sing 1.09 N N
105 C27 H48 C H sing 1.09 N N
106 C28 H49 C H sing 1.09 N N
107 C28 H50 C H sing 1.09 N N
108 C29 H51 C H sing 1.09 N N
109 C29 H52 C H sing 1.09 N N
110 C30 H53 C H sing 1.09 N N
111 C30 H54 C H sing 1.09 N N
112 C30 H55 C H sing 1.09 N N
113 C31 H56 C H sing 1.09 N N
114 C31 H57 C H sing 1.09 N N
115 C32 H58 C H sing 1.09 N N
116 C32 H59 C H sing 1.09 N N
117 C33 H60 C H sing 1.09 N N
118 C33 H61 C H sing 1.09 N N
119 C34 H62 C H sing 1.09 N N
120 C34 H63 C H sing 1.09 N N
121 C35 H64 C H sing 1.09 N N
122 C35 H65 C H sing 1.09 N N
123 C36 H66 C H sing 1.09 N N
124 C36 H67 C H sing 1.09 N N
125 C37 H68 C H sing 1.09 N N
126 C37 H69 C H sing 1.09 N N
127 C38 H70 C H sing 1.09 N N
128 C38 H71 C H sing 1.09 N N
129 C39 H72 C H sing 1.09 N N
130 C39 H73 C H sing 1.09 N N
131 C40 H74 C H sing 1.09 N N
132 C40 H75 C H sing 1.09 N N
133 C41 H76 C H sing 1.09 N N
134 C41 H77 C H sing 1.09 N N
135 O41 H78 O H sing 0.97 N N
136 C42 H79 C H sing 1.09 N N
137 C42 H80 C H sing 1.09 N N
138 O42 H81 O H sing 0.97 N N
139 C43 H82 C H sing 1.09 N N
140 C43 H83 C H sing 1.09 N N
141 C44 H84 C H sing 1.09 N N
142 C44 H85 C H sing 1.09 N N
143 C45 H86 C H sing 1.09 N N
144 C45 H87 C H sing 1.09 N N
145 C46 H88 C H sing 1.09 N N
146 C46 H89 C H sing 1.09 N N
147 C47 H90 C H sing 1.09 N N
148 C47 H91 C H sing 1.09 N N
149 C47 H92 C H sing 1.09 N N