Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 34M    

Bonds between two atoms of the molecule

Total Number of Bonds: 51


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 S1 C2 S C sing 1.81 N N
2 S1 C25 S C sing 1.76 N N
3 C2 C5 C C sing 1.51 N N
4 C5 N6 C N doub 1.31 N Y
5 C5 O9 C O sing 1.34 N Y
6 N6 C7 N C sing 1.35 N Y
7 C7 N8 C N doub 1.31 N Y
8 C7 C10 C C sing 1.48 N N
9 N8 O9 N O sing 1.21 N Y
10 C10 C11 C C doub 1.39 N Y
11 C10 C18 C C sing 1.39 N Y
12 C11 C13 C C sing 1.38 N Y
13 C13 C15 C C doub 1.39 N Y
14 C15 C16 C C sing 1.39 N Y
15 C15 O20 C O sing 1.36 N N
16 C16 C18 C C doub 1.38 N Y
17 O20 C21 O C sing 1.43 N N
18 C25 N26 C N sing 1.37 N Y
19 C25 N29 C N doub 1.31 N Y
20 N26 C27 N C sing 1.37 N Y
21 N26 C34 N C sing 1.4 N N
22 C27 N28 C N doub 1.3 N Y
23 C27 C30 C C sing 1.51 N N
24 N28 N29 N N sing 1.29 N Y
25 C34 C35 C C doub 1.39 N Y
26 C34 C42 C C sing 1.39 N Y
27 C35 C37 C C sing 1.38 N Y
28 C37 C39 C C doub 1.39 N Y
29 C39 C40 C C sing 1.39 N Y
30 C39 O44 C O sing 1.36 N N
31 C40 C42 C C doub 1.38 N Y
32 O44 C45 O C sing 1.43 N N
33 C2 H2 C H sing 1.09 N N
34 C2 H2A C H sing 1.09 N N
35 C11 H11 C H sing 1.08 N N
36 C13 H13 C H sing 1.08 N N
37 C16 H16 C H sing 1.08 N N
38 C18 H18 C H sing 1.08 N N
39 C21 H21 C H sing 1.09 N N
40 C21 H21A C H sing 1.09 N N
41 C21 H21B C H sing 1.09 N N
42 C30 H30 C H sing 1.09 N N
43 C30 H30A C H sing 1.09 N N
44 C30 H30B C H sing 1.09 N N
45 C35 H35 C H sing 1.08 N N
46 C37 H37 C H sing 1.08 N N
47 C40 H40 C H sing 1.08 N N
48 C42 H42 C H sing 1.08 N N
49 C45 H45 C H sing 1.09 N N
50 C45 H45A C H sing 1.09 N N
51 C45 H45B C H sing 1.09 N N