Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : 38X    

Bonds between two atoms of the molecule

Total Number of Bonds: 96


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C37 C38 C C sing 1.53 N N
2 C37 C31 C C sing 1.51 N N
3 C37 C39 C C sing 1.53 N N
4 C31 O32 C O doub 1.21 N N
5 C31 C29 C C sing 1.51 N N
6 C39 O40 C O sing 1.43 N N
7 C42 C41 C C sing 1.53 N N
8 C42 C43 C C sing 1.53 N N
9 C30 C41 C C sing 1.53 N N
10 C30 C29 C C sing 1.53 N N
11 C41 C46 C C sing 1.53 N N
12 C29 N28 C N sing 1.46 N N
13 C43 C44 C C sing 1.53 N N
14 C44 C45 C C sing 1.53 N N
15 C46 C45 C C sing 1.53 N N
16 N28 C26 N C sing 1.35 N N
17 C26 O27 C O doub 1.21 N N
18 C26 C16 C C sing 1.51 N N
19 C16 C17 C C sing 1.53 N N
20 C16 N15 C N sing 1.46 N N
21 C17 C66 C C sing 1.51 N N
22 C65 C66 C C doub 1.34 N Y
23 C65 N69 C N sing 1.37 N Y
24 C66 C67 C C sing 1.47 N Y
25 N69 C68 N C sing 1.38 N Y
26 N15 C13 N C sing 1.35 N N
27 C67 C68 C C doub 1.41 N Y
28 C67 C63 C C sing 1.4 N Y
29 C68 C60 C C sing 1.39 N Y
30 C63 C62 C C doub 1.37 N Y
31 C60 C61 C C doub 1.38 N Y
32 C13 O14 C O doub 1.21 N N
33 C13 C11 C C sing 1.51 N N
34 C62 C61 C C sing 1.39 N Y
35 C12 C11 C C sing 1.53 N N
36 C11 N1 C N sing 1.46 N N
37 N1 C2 N C sing 1.35 N N
38 O3 C2 O C doub 1.22 N N
39 C2 C50 C C sing 1.46 N N
40 C50 C51 C C sing 1.51 N N
41 C50 C58 C C doub 1.35 N N
42 C51 C52 C C sing 1.51 N N
43 C59 C58 C C sing 1.51 N N
44 C58 C57 C C sing 1.47 N N
45 C52 C57 C C doub 1.4 N Y
46 C52 C53 C C sing 1.38 N Y
47 C57 C56 C C sing 1.4 N Y
48 C53 C54 C C doub 1.39 N Y
49 C56 C55 C C doub 1.38 N Y
50 C54 C55 C C sing 1.38 N Y
51 N1 H1 N H sing 0.97 N N
52 C17 H2 C H sing 1.09 N N
53 C17 H3 C H sing 1.09 N N
54 C59 H4 C H sing 1.09 N N
55 C59 H5 C H sing 1.09 N N
56 C59 H6 C H sing 1.09 N N
57 C56 H7 C H sing 1.08 N N
58 C55 H8 C H sing 1.08 N N
59 C54 H9 C H sing 1.08 N N
60 C53 H10 C H sing 1.08 N N
61 C51 H11 C H sing 1.09 N N
62 C51 H12 C H sing 1.09 N N
63 C11 H13 C H sing 1.09 N N
64 C12 H14 C H sing 1.09 N N
65 C12 H15 C H sing 1.09 N N
66 C12 H16 C H sing 1.09 N N
67 N15 H17 N H sing 0.97 N N
68 C16 H18 C H sing 1.09 N N
69 C63 H19 C H sing 1.08 N N
70 C62 H21 C H sing 1.08 N N
71 C61 H22 C H sing 1.08 N N
72 C60 H23 C H sing 1.08 N N
73 C65 H24 C H sing 1.08 N N
74 N28 H25 N H sing 0.97 N N
75 C29 H26 C H sing 1.09 N N
76 C30 H27 C H sing 1.09 N N
77 C30 H28 C H sing 1.09 N N
78 C41 H29 C H sing 1.09 N N
79 C42 H30 C H sing 1.09 N N
80 C42 H31 C H sing 1.09 N N
81 C43 H32 C H sing 1.09 N N
82 C43 H33 C H sing 1.09 N N
83 C44 H34 C H sing 1.09 N N
84 C44 H35 C H sing 1.09 N N
85 C45 H36 C H sing 1.09 N N
86 C46 H37 C H sing 1.09 N N
87 C37 H40 C H sing 1.09 N N
88 C38 H41 C H sing 1.09 N N
89 C38 H42 C H sing 1.09 N N
90 C38 H43 C H sing 1.09 N N
91 C39 H44 C H sing 1.09 N N
92 C39 H45 C H sing 1.09 N N
93 O40 H46 O H sing 0.97 N N
94 C46 H20 C H sing 1.09 N N
95 C45 H38 C H sing 1.09 N N
96 N69 H39 N H sing 0.97 N N