Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 38Y    

Bonds between two atoms of the molecule

Total Number of Bonds: 67


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O2' B O B sing 1.43 N N
2 O1 B O B sing 1.42 N N
3 B O3' B O sing 1.43 N N
4 O5' P O P sing 1.61 N N
5 O2P P O P doub 1.48 N N
6 O1P P O P sing 1.61 N N
7 P O3P P O sing 1.61 N N
8 N1 C2 N C doub 1.32 N Y
9 N1 C6 N C sing 1.33 N Y
10 O1 C10 O C sing 1.43 N N
11 C2 N3 C N sing 1.32 N Y
12 C2 H2 C H sing 1.08 N N
13 N3 C4 N C doub 1.33 N Y
14 C5 C4 C C sing 1.41 N Y
15 C4 N9 C N sing 1.37 N Y
16 C6 C5 C C doub 1.4 N Y
17 C5 N7 C N sing 1.35 N Y
18 N6 C6 N C sing 1.38 N N
19 N6 HN6 N H sing 0.97 N N
20 N6 HN6A N H sing 0.97 N N
21 N7 C8 N C doub 1.3 N Y
22 N9 C8 N C sing 1.36 N Y
23 C8 H8 C H sing 1.08 N N
24 N9 C1' N C sing 1.47 N N
25 C13 BR C BR sing 1.89 N N
26 C1' C2' C C sing 1.54 N N
27 C1' O4' C O sing 1.44 N N
28 C1' H1' C H sing 1.09 N N
29 C33 C10 C C sing 1.53 N N
30 C10 C11 C C sing 1.51 N N
31 C10 H10 C H sing 1.09 N N
32 C12 C11 C C doub 1.38 N Y
33 C11 C13 C C sing 1.38 N Y
34 C12 C16 C C sing 1.39 N Y
35 C12 H12 C H sing 1.08 N N
36 C13 C14 C C doub 1.38 N Y
37 C15 C14 C C sing 1.38 N Y
38 C14 H14 C H sing 1.08 N N
39 C16 C15 C C doub 1.39 N Y
40 C15 H15 C H sing 1.08 N N
41 O35 C16 O C sing 1.36 N N
42 O1P HO1P O H sing 0.97 N N
43 C2' O2' C O sing 1.45 N N
44 C2' C3' C C sing 1.56 N N
45 C2' H2' C H sing 1.09 N N
46 C3' C4' C C sing 1.55 N N
47 C3' O3' C O sing 1.44 N N
48 C3' H3' C H sing 1.09 N N
49 N34 C33 N C sing 1.47 N N
50 C33 H33 C H sing 1.09 N N
51 C33 H33A C H sing 1.09 N N
52 N34 HN34 N H sing 1.01 N N
53 N34 HN3A N H sing 1.01 N N
54 O35 C36 O C sing 1.43 N N
55 C37 C36 C C sing 1.53 N N
56 C36 H36 C H sing 1.09 N N
57 C36 H36A C H sing 1.09 N N
58 C37 H37 C H sing 1.09 N N
59 C37 H37A C H sing 1.09 N N
60 C37 H37B C H sing 1.09 N N
61 O3P HO3P O H sing 0.97 N N
62 O4' C4' O C sing 1.44 N N
63 C4' C5' C C sing 1.53 N N
64 C4' H4' C H sing 1.09 N N
65 C5' O5' C O sing 1.43 N N
66 C5' H5' C H sing 1.09 N N
67 C5' H5'A C H sing 1.09 N N