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PDBeChem : Chemical Bonds
Molecule :
38Y
Bonds between two atoms of the molecule
Total Number of Bonds: 67
50
10 per page
20 per page
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Record
First Atom
Second Atom
First Element
Second Element
Bond Order Type
Bond Length
Bond Stereochemistry
Is Aromatic
1
O2'
B
O
B
sing
1.43
N
N
2
O1
B
O
B
sing
1.42
N
N
3
B
O3'
B
O
sing
1.43
N
N
4
O5'
P
O
P
sing
1.61
N
N
5
O2P
P
O
P
doub
1.48
N
N
6
O1P
P
O
P
sing
1.61
N
N
7
P
O3P
P
O
sing
1.61
N
N
8
N1
C2
N
C
doub
1.32
N
Y
9
N1
C6
N
C
sing
1.33
N
Y
10
O1
C10
O
C
sing
1.43
N
N
11
C2
N3
C
N
sing
1.32
N
Y
12
C2
H2
C
H
sing
1.08
N
N
13
N3
C4
N
C
doub
1.33
N
Y
14
C5
C4
C
C
sing
1.41
N
Y
15
C4
N9
C
N
sing
1.37
N
Y
16
C6
C5
C
C
doub
1.4
N
Y
17
C5
N7
C
N
sing
1.35
N
Y
18
N6
C6
N
C
sing
1.38
N
N
19
N6
HN6
N
H
sing
0.97
N
N
20
N6
HN6A
N
H
sing
0.97
N
N
21
N7
C8
N
C
doub
1.3
N
Y
22
N9
C8
N
C
sing
1.36
N
Y
23
C8
H8
C
H
sing
1.08
N
N
24
N9
C1'
N
C
sing
1.47
N
N
25
C13
BR
C
BR
sing
1.89
N
N
26
C1'
C2'
C
C
sing
1.54
N
N
27
C1'
O4'
C
O
sing
1.44
N
N
28
C1'
H1'
C
H
sing
1.09
N
N
29
C33
C10
C
C
sing
1.53
N
N
30
C10
C11
C
C
sing
1.51
N
N
31
C10
H10
C
H
sing
1.09
N
N
32
C12
C11
C
C
doub
1.38
N
Y
33
C11
C13
C
C
sing
1.38
N
Y
34
C12
C16
C
C
sing
1.39
N
Y
35
C12
H12
C
H
sing
1.08
N
N
36
C13
C14
C
C
doub
1.38
N
Y
37
C15
C14
C
C
sing
1.38
N
Y
38
C14
H14
C
H
sing
1.08
N
N
39
C16
C15
C
C
doub
1.39
N
Y
40
C15
H15
C
H
sing
1.08
N
N
41
O35
C16
O
C
sing
1.36
N
N
42
O1P
HO1P
O
H
sing
0.97
N
N
43
C2'
O2'
C
O
sing
1.45
N
N
44
C2'
C3'
C
C
sing
1.56
N
N
45
C2'
H2'
C
H
sing
1.09
N
N
46
C3'
C4'
C
C
sing
1.55
N
N
47
C3'
O3'
C
O
sing
1.44
N
N
48
C3'
H3'
C
H
sing
1.09
N
N
49
N34
C33
N
C
sing
1.47
N
N
50
C33
H33
C
H
sing
1.09
N
N
51
C33
H33A
C
H
sing
1.09
N
N
52
N34
HN34
N
H
sing
1.01
N
N
53
N34
HN3A
N
H
sing
1.01
N
N
54
O35
C36
O
C
sing
1.43
N
N
55
C37
C36
C
C
sing
1.53
N
N
56
C36
H36
C
H
sing
1.09
N
N
57
C36
H36A
C
H
sing
1.09
N
N
58
C37
H37
C
H
sing
1.09
N
N
59
C37
H37A
C
H
sing
1.09
N
N
60
C37
H37B
C
H
sing
1.09
N
N
61
O3P
HO3P
O
H
sing
0.97
N
N
62
O4'
C4'
O
C
sing
1.44
N
N
63
C4'
C5'
C
C
sing
1.53
N
N
64
C4'
H4'
C
H
sing
1.09
N
N
65
C5'
O5'
C
O
sing
1.43
N
N
66
C5'
H5'
C
H
sing
1.09
N
N
67
C5'
H5'A
C
H
sing
1.09
N
N