Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 3GU    

Bonds between two atoms of the molecule

Total Number of Bonds: 48


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 N6 C N sing 1.46 N N
2 C1 C21 C C sing 1.54 N N
3 C1 C24 C C sing 1.54 N N
4 N1 C2 N C doub 1.32 N Y
5 N1 C6 N C sing 1.33 N Y
6 C2 N3 C N sing 1.32 N Y
7 N3 C4 N C doub 1.33 N Y
8 C4 C5 C C sing 1.41 N Y
9 C4 N9 C N sing 1.37 N Y
10 C5 C6 C C doub 1.41 N Y
11 C5 N7 C N sing 1.35 N Y
12 C6 N6 C N sing 1.38 N N
13 N7 C8 N C doub 1.3 N Y
14 C8 N9 C N sing 1.36 N Y
15 N9 C1' N C sing 1.47 N N
16 C1' C2' C C sing 1.55 N N
17 C1' O4' C O sing 1.44 N N
18 C2' O2' C O sing 1.43 N N
19 C2' C3' C C sing 1.55 N N
20 C21 C22 C C sing 1.54 N N
21 C22 C23 C C sing 1.55 N N
22 C23 C24 C C sing 1.55 N N
23 C3' O3' C O sing 1.43 N N
24 C3' C4' C C sing 1.54 N N
25 C4' O4' C O sing 1.44 N N
26 C4' C5' C C sing 1.53 N N
27 C5' O5' C O sing 1.43 N N
28 C1 H1 C H sing 1.09 N N
29 C2 H2 C H sing 1.08 N N
30 N6 HN6 N H sing 0.97 N N
31 C8 H8 C H sing 1.08 N N
32 C1' H1' C H sing 1.09 N N
33 C2' H2' C H sing 1.09 N N
34 O2' HO2' O H sing 0.97 N N
35 C21 H21 C H sing 1.09 N N
36 C21 H21A C H sing 1.09 N N
37 C22 H22 C H sing 1.09 N N
38 C22 H22A C H sing 1.09 N N
39 C23 H23 C H sing 1.09 N N
40 C23 H23A C H sing 1.09 N N
41 C24 H24 C H sing 1.09 N N
42 C24 H24A C H sing 1.09 N N
43 C3' H3' C H sing 1.09 N N
44 O3' HO3' O H sing 0.97 N N
45 C4' H4' C H sing 1.09 N N
46 C5' H5' C H sing 1.09 N N
47 C5' H5'A C H sing 1.09 N N
48 O5' HO5' O H sing 0.97 N N