Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 3PE    

Bonds between two atoms of the molecule

Total Number of Bonds: 132


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 P O11 P O sing 1.61 N N
2 P O12 P O sing 1.61 N N
3 P O13 P O sing 1.61 N N
4 P O14 P O doub 1.48 N N
5 N C12 N C sing 1.47 N N
6 N HN1 N H sing 1.01 N N
7 N HN2 N H sing 1.01 N N
8 O11 C1 O C sing 1.43 N N
9 O13 C11 O C sing 1.43 N N
10 C11 C12 C C sing 1.53 N N
11 C11 H111 C H sing 1.09 N N
12 C11 H112 C H sing 1.09 N N
13 C12 H121 C H sing 1.09 N N
14 C12 H122 C H sing 1.09 N N
15 C1 C2 C C sing 1.53 N N
16 C1 H11 C H sing 1.09 N N
17 C1 H12 C H sing 1.09 N N
18 C2 C3 C C sing 1.53 N N
19 C2 O21 C O sing 1.45 N N
20 C2 H2 C H sing 1.09 N N
21 C3 O31 C O sing 1.45 N N
22 C3 H31 C H sing 1.09 N N
23 C3 H32 C H sing 1.09 N N
24 O31 C31 O C sing 1.34 N N
25 O32 C31 O C doub 1.21 N N
26 C31 C32 C C sing 1.51 N N
27 C32 C33 C C sing 1.53 N N
28 C32 H321 C H sing 1.09 N N
29 C32 H322 C H sing 1.09 N N
30 C33 C34 C C sing 1.53 N N
31 C33 H331 C H sing 1.09 N N
32 C33 H332 C H sing 1.09 N N
33 C34 C35 C C sing 1.53 N N
34 C34 H341 C H sing 1.09 N N
35 C34 H342 C H sing 1.09 N N
36 C35 C36 C C sing 1.53 N N
37 C35 H351 C H sing 1.09 N N
38 C35 H352 C H sing 1.09 N N
39 C36 C37 C C sing 1.53 N N
40 C36 H361 C H sing 1.09 N N
41 C36 H362 C H sing 1.09 N N
42 C37 C38 C C sing 1.53 N N
43 C37 H371 C H sing 1.09 N N
44 C37 H372 C H sing 1.09 N N
45 C38 C39 C C sing 1.53 N N
46 C38 H381 C H sing 1.09 N N
47 C38 H382 C H sing 1.09 N N
48 C39 C3A C C sing 1.53 N N
49 C39 H391 C H sing 1.09 N N
50 C39 H392 C H sing 1.09 N N
51 C3A C3B C C sing 1.53 N N
52 C3A H3A1 C H sing 1.09 N N
53 C3A H3A2 C H sing 1.09 N N
54 C3B C3C C C sing 1.53 N N
55 C3B H3B1 C H sing 1.09 N N
56 C3B H3B2 C H sing 1.09 N N
57 C3C C3D C C sing 1.53 N N
58 C3C H3C1 C H sing 1.09 N N
59 C3C H3C2 C H sing 1.09 N N
60 C3D C3E C C sing 1.53 N N
61 C3D H3D1 C H sing 1.09 N N
62 C3D H3D2 C H sing 1.09 N N
63 C3E C3F C C sing 1.53 N N
64 C3E H3E1 C H sing 1.09 N N
65 C3E H3E2 C H sing 1.09 N N
66 C3F C3G C C sing 1.53 N N
67 C3F H3F1 C H sing 1.09 N N
68 C3F H3F2 C H sing 1.09 N N
69 C3G C3H C C sing 1.53 N N
70 C3G H3G1 C H sing 1.09 N N
71 C3G H3G2 C H sing 1.09 N N
72 C3H C3I C C sing 1.53 N N
73 C3H H3H1 C H sing 1.09 N N
74 C3H H3H2 C H sing 1.09 N N
75 C3I H3I1 C H sing 1.09 N N
76 C3I H3I2 C H sing 1.09 N N
77 C3I H3I3 C H sing 1.09 N N
78 O21 C21 O C sing 1.34 N N
79 O22 C21 O C doub 1.21 N N
80 C21 C22 C C sing 1.51 N N
81 C22 C23 C C sing 1.53 N N
82 C22 H221 C H sing 1.09 N N
83 C22 H222 C H sing 1.09 N N
84 C23 C24 C C sing 1.53 N N
85 C23 H231 C H sing 1.09 N N
86 C23 H232 C H sing 1.09 N N
87 C24 C25 C C sing 1.53 N N
88 C24 H241 C H sing 1.09 N N
89 C24 H242 C H sing 1.09 N N
90 C25 C26 C C sing 1.53 N N
91 C25 H251 C H sing 1.09 N N
92 C25 H252 C H sing 1.09 N N
93 C26 C27 C C sing 1.53 N N
94 C26 H261 C H sing 1.09 N N
95 C26 H262 C H sing 1.09 N N
96 C27 C28 C C sing 1.53 N N
97 C27 H271 C H sing 1.09 N N
98 C27 H272 C H sing 1.09 N N
99 C28 C29 C C sing 1.53 N N
100 C28 H281 C H sing 1.09 N N
101 C28 H282 C H sing 1.09 N N
102 C29 C2A C C sing 1.53 N N
103 C29 H291 C H sing 1.09 N N
104 C29 H292 C H sing 1.09 N N
105 C2A C2B C C sing 1.53 N N
106 C2A H2A1 C H sing 1.09 N N
107 C2A H2A2 C H sing 1.09 N N
108 C2B C2C C C sing 1.53 N N
109 C2B H2B1 C H sing 1.09 N N
110 C2B H2B2 C H sing 1.09 N N
111 C2C C2D C C sing 1.53 N N
112 C2C H2C1 C H sing 1.09 N N
113 C2C H2C2 C H sing 1.09 N N
114 C2D C2E C C sing 1.53 N N
115 C2D H2D1 C H sing 1.09 N N
116 C2D H2D2 C H sing 1.09 N N
117 C2E C2F C C sing 1.53 N N
118 C2E H2E1 C H sing 1.09 N N
119 C2E H2E2 C H sing 1.09 N N
120 C2F C2G C C sing 1.53 N N
121 C2F H2F1 C H sing 1.09 N N
122 C2F H2F2 C H sing 1.09 N N
123 C2G C2H C C sing 1.53 N N
124 C2G H2G1 C H sing 1.09 N N
125 C2G H2G2 C H sing 1.09 N N
126 C2H C2I C C sing 1.53 N N
127 C2H H2H1 C H sing 1.09 N N
128 C2H H2H2 C H sing 1.09 N N
129 C2I H2I1 C H sing 1.09 N N
130 C2I H2I2 C H sing 1.09 N N
131 C2I H2I3 C H sing 1.09 N N
132 O12 H1 O H sing 0.97 N N