Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 418    

Bonds between two atoms of the molecule

Total Number of Bonds: 86


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O6 C24 O C sing 1.34 N N
2 O6 HO6 O H sing 0.98 N N
3 C24 O7 C O doub 1.21 N N
4 C24 C8 C C sing 1.5 N N
5 C8 O5 C O doub 1.23 N N
6 C8 N4 C N sing 1.43 N N
7 N4 C2 N C sing 1.4 N N
8 N4 C26 N C sing 1.46 N N
9 C2 C3 C C doub 1.39 N Y
10 C2 C1 C C sing 1.4 N Y
11 C3 C4 C C sing 1.39 N Y
12 C3 H3 C H sing 1.09 N N
13 C4 C5 C C doub 1.39 N Y
14 C4 H4 C H sing 1.09 N N
15 C5 C6 C C sing 1.39 N Y
16 C5 C7 C C sing 1.51 N N
17 C6 C1 C C doub 1.4 N Y
18 C6 H6 C H sing 1.09 N N
19 C1 H1 C H sing 1.09 N N
20 C7 C9 C C sing 1.53 N N
21 C7 H71 C H sing 1.1 N N
22 C7 H72 C H sing 1.1 N N
23 C9 N1 C N sing 1.44 N N
24 C9 C11 C C sing 1.52 N N
25 C9 H9 C H sing 1.1 N N
26 N1 C10 N C sing 1.38 N N
27 N1 HN1 N H sing 1.02 N N
28 C10 O4 C O doub 1.23 N N
29 C10 O23 C O sing 1.37 N N
30 O23 C40 O C sing 1.43 N N
31 C40 C41 C C sing 1.49 N N
32 C40 H401 C H sing 1.09 N N
33 C40 H402 C H sing 1.1 N N
34 C41 C42 C C doub 1.34 N N
35 C41 H41 C H sing 1.09 N N
36 C42 H421 C H sing 1.08 N N
37 C42 H422 C H sing 1.08 N N
38 C11 O8 C O doub 1.23 N N
39 C11 N2 C N sing 1.39 N N
40 N2 C12 N C sing 1.44 N N
41 N2 HN2 N H sing 1.02 N N
42 C12 C13 C C sing 1.53 N N
43 C12 H121 C H sing 1.09 N N
44 C12 H122 C H sing 1.09 N N
45 C13 C15 C C sing 1.53 N N
46 C13 H131 C H sing 1.1 N N
47 C13 H132 C H sing 1.1 N N
48 C15 C14 C C sing 1.52 N N
49 C15 H151 C H sing 1.1 N N
50 C15 H152 C H sing 1.1 N N
51 C14 O1 C O sing 1.42 N N
52 C14 H141 C H sing 1.09 N N
53 C14 H142 C H sing 1.09 N N
54 O1 C32 O C sing 1.37 N N
55 C32 C33 C C doub 1.39 N Y
56 C32 C37 C C sing 1.39 N Y
57 C33 C34 C C sing 1.39 N Y
58 C33 H33 C H sing 1.09 N N
59 C34 C35 C C doub 1.39 N Y
60 C34 H34 C H sing 1.09 N N
61 C35 C36 C C sing 1.39 N Y
62 C35 H35 C H sing 1.09 N N
63 C36 O13 C O sing 1.36 N N
64 C36 C37 C C doub 1.4 N Y
65 O13 H13 O H sing 0.97 N N
66 C37 C38 C C sing 1.46 N N
67 C38 O11 C O doub 1.24 N N
68 C38 O12 C O sing 1.37 N N
69 O12 C39 O C sing 1.43 N N
70 C39 H391 C H sing 1.09 N N
71 C39 H392 C H sing 1.09 N N
72 C39 H393 C H sing 1.09 N N
73 C26 C27 C C doub 1.37 N Y
74 C26 C25 C C sing 1.36 N Y
75 C27 C28 C C sing 1.39 N Y
76 C27 H27 C H sing 1.09 N N
77 C28 C29 C C doub 1.39 N Y
78 C28 H28 C H sing 1.09 N N
79 C29 C30 C C sing 1.39 N Y
80 C29 H29 C H sing 1.09 N N
81 C30 C25 C C doub 1.4 N Y
82 C30 H30 C H sing 1.09 N N
83 C25 C31 C C sing 1.46 N N
84 C31 O9 C O doub 1.23 N N
85 C31 O10 C O sing 1.36 N N
86 O10 H10 O H sing 0.98 N N