Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 42E    

Bonds between two atoms of the molecule

Total Number of Bonds: 32


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O1A PA O P doub 1.48 N N
2 O2A PA O P sing 1.61 N N
3 PA O5' P O sing 1.61 N N
4 O5' C5' O C sing 1.43 N N
5 C5' C4' C C sing 1.53 N N
6 S3' C4' S C sing 1.84 N N
7 S3' C2' S C sing 1.84 N N
8 C5 C6 C C doub 1.35 N N
9 C5 C4 C C sing 1.41 N N
10 C4' O4' C O sing 1.44 N N
11 C6 N1 C N sing 1.36 N N
12 N4 C4 N C sing 1.38 N N
13 C4 N3 C N doub 1.33 N N
14 C2' C1' C C sing 1.55 N N
15 O4' C1' O C sing 1.42 N N
16 N1 C1' N C sing 1.46 N N
17 N1 C2 N C sing 1.35 N N
18 N3 C2 N C sing 1.33 N N
19 C2 O2 C O doub 1.22 N N
20 O2A H2 O H sing 0.97 N N
21 C5' H3 C H sing 1.09 N N
22 C5' H4 C H sing 1.09 N N
23 C4' H5 C H sing 1.09 N N
24 C2' H6 C H sing 1.09 N N
25 C2' H7 C H sing 1.09 N N
26 C1' H8 C H sing 1.09 N N
27 N4 H9 N H sing 0.97 N N
28 N4 H10 N H sing 0.97 N N
29 C5 H11 C H sing 1.08 N N
30 C6 H12 C H sing 1.08 N N
31 PA OP3 P O sing 1.61 N N
32 OP3 H1 O H sing 0.97 N N