Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 44D    

Bonds between two atoms of the molecule

Total Number of Bonds: 88


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 C2 C C doub 1.38 N Y
2 C1 C15 C C sing 1.39 N Y
3 C1 HC1 C H sing 1.08 N N
4 C2 C3 C C sing 1.38 N Y
5 C2 HC2 C H sing 1.08 N N
6 C3 C4 C C doub 1.38 N Y
7 C3 HC3 C H sing 1.08 N N
8 C4 C16 C C sing 1.39 N Y
9 C4 HC4 C H sing 1.08 N N
10 C5 C16 C C sing 1.48 N N
11 C5 C17 C C sing 1.47 N N
12 C5 O5 C O doub 1.22 N N
13 C6 C17 C C doub 1.39 N Y
14 C6 C20 C C sing 1.4 N Y
15 C6 O6 C O sing 1.36 N N
16 C7 C8 C C sing 1.53 N N
17 C7 C20 C C sing 1.51 N N
18 C7 O7 C O sing 1.43 N N
19 C7 HC7 C H sing 1.09 N N
20 C8 C9 C C sing 1.53 N N
21 C8 HC81 C H sing 1.09 N N
22 C8 HC82 C H sing 1.09 N N
23 C9 C10 C C sing 1.53 N N
24 C9 C13 C C sing 1.51 N N
25 C9 O9 C O sing 1.43 N N
26 C10 C19 C C sing 1.51 N N
27 C10 H101 C H sing 1.09 N N
28 C10 H102 C H sing 1.09 N N
29 C11 C18 C C doub 1.39 N Y
30 C11 C19 C C sing 1.4 N Y
31 C11 O11 C O sing 1.36 N N
32 C12 C15 C C sing 1.48 N N
33 C12 C18 C C sing 1.47 N N
34 C12 O12 C O doub 1.22 N N
35 C13 C14 C C sing 1.51 N N
36 C13 O13 C O doub 1.21 N N
37 C14 O14 C O sing 1.43 N N
38 C14 H141 C H sing 1.09 N N
39 C14 H142 C H sing 1.09 N N
40 C15 C16 C C doub 1.41 N Y
41 C17 C18 C C sing 1.41 N Y
42 C19 C20 C C doub 1.37 N Y
43 O6 HO6 O H sing 0.97 N N
44 O7 C1B O C sing 1.43 N N
45 O9 HO9 O H sing 0.97 N N
46 O11 H11 O H sing 0.97 N N
47 O14 H14 O H sing 0.97 N N
48 C1B C2B C C sing 1.53 N N
49 C1B O5B C O sing 1.43 N N
50 C1B H1B C H sing 1.09 N N
51 C2B C3B C C sing 1.53 N N
52 C2B H2'1 C H sing 1.09 N N
53 C2B H2'2 C H sing 1.09 N N
54 C3B C4B C C sing 1.53 N N
55 C3B O3' C O sing 1.43 N N
56 C3B H3B C H sing 1.09 N N
57 C4B C5B C C sing 1.53 N N
58 C4B O4B C O sing 1.43 N N
59 C4B H4B C H sing 1.09 N N
60 C5B C6B C C sing 1.53 N N
61 C5B O5B C O sing 1.43 N N
62 C5B H5B C H sing 1.09 N N
63 C6B H6'1 C H sing 1.09 N N
64 C6B H6'2 C H sing 1.09 N N
65 C6B H6'3 C H sing 1.09 N N
66 O3' H3'O O H sing 0.97 N N
67 O4B C1' O C sing 1.43 N N
68 C1' C2' C C sing 1.53 N N
69 C1' O5' C O sing 1.43 N N
70 C1' H1' C H sing 1.09 N N
71 C2' C3' C C sing 1.53 N N
72 C2' H2B C H sing 1.09 N N
73 C2' H2D C H sing 1.09 N N
74 C3' C4' C C sing 1.53 N N
75 C3' N3' C N sing 1.47 N N
76 C3' H3' C H sing 1.09 N N
77 C4' C5' C C sing 1.53 N N
78 C4' O4' C O sing 1.43 N N
79 C4' H4' C H sing 1.09 N N
80 C5' C6' C C sing 1.53 N N
81 C5' O5' C O sing 1.43 N N
82 C5' H5' C H sing 1.09 N N
83 C6' H6B C H sing 1.09 N N
84 C6' H6D C H sing 1.09 N N
85 C6' H6E C H sing 1.09 N N
86 O4' H4'O O H sing 0.97 N N
87 N3' H3'1 N H sing 1.01 N N
88 N3' H3'2 N H sing 1.01 N N