Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 48L    

Bonds between two atoms of the molecule

Total Number of Bonds: 74


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N C6 N C doub 1.29 N N
2 N C7 N C sing 1.47 N N
3 CG1 CD1 C C doub 1.38 N Y
4 CG1 CD2 C C sing 1.38 N Y
5 CG1 C8 C C sing 1.51 N N
6 CG2 CD3 C C doub 1.38 N Y
7 CG2 CD4 C C sing 1.39 N Y
8 CG2 C7 C C sing 1.51 N N
9 CG3 CD5 C C doub 1.4 N Y
10 CG3 CD6 C C sing 1.4 N Y
11 CG3 C6 C C sing 1.48 N N
12 CD1 CE1 C C sing 1.38 N Y
13 CD2 CE2 C C doub 1.38 N Y
14 CD3 CE4 C C sing 1.38 N Y
15 CD4 CE3 C C doub 1.38 N Y
16 CD4 F C F sing 1.35 N N
17 CD5 CE5 C C sing 1.38 N Y
18 CD6 CE6 C C doub 1.38 N Y
19 CD6 O6 C O sing 1.36 N N
20 CE1 CZ1 C C doub 1.38 N Y
21 CE2 CZ1 C C sing 1.38 N Y
22 CE3 CZ2 C C sing 1.38 N Y
23 CE4 CZ2 C C doub 1.38 N Y
24 CE5 CZ3 C C doub 1.39 N Y
25 CE6 CZ3 C C sing 1.39 N Y
26 CZ3 O3 C O sing 1.36 N N
27 CM1 O3 C O sing 1.43 N N
28 CM2 C9 C C sing 1.53 N N
29 CM3 C9 C C sing 1.53 N N
30 C1 N1 C N sing 1.33 N N
31 C1 O1 C O doub 1.21 N N
32 C1 C4 C C sing 1.5 N N
33 N1 C2 N C sing 1.46 N N
34 C2 C3 C C sing 1.53 N N
35 N2 C3 N C sing 1.47 N N
36 N2 C4 N C sing 1.47 N N
37 N2 C5 N C sing 1.35 N N
38 N3 C5 N C sing 1.35 N N
39 N3 C6 N C sing 1.38 N N
40 N3 C8 N C sing 1.47 N N
41 C5 O5 C O doub 1.22 N N
42 O6 C9 O C sing 1.43 N N
43 C7 C8 C C sing 1.54 N N
44 CZ1 CL C CL sing 1.74 N N
45 CE4 BR C BR sing 1.89 N N
46 CD1 HD1 C H sing 1.08 N N
47 CD2 HD2 C H sing 1.08 N N
48 CD3 HD3 C H sing 1.08 N N
49 CD5 HD5 C H sing 1.08 N N
50 CE1 HE1 C H sing 1.08 N N
51 CE2 HE2 C H sing 1.08 N N
52 CE3 HE3 C H sing 1.08 N N
53 CE5 HE5 C H sing 1.08 N N
54 CE6 HE6 C H sing 1.08 N N
55 CZ2 HZ2 C H sing 1.08 N N
56 CM1 HM11 C H sing 1.09 N N
57 CM1 HM12 C H sing 1.09 N N
58 CM1 HM13 C H sing 1.09 N N
59 CM2 HM21 C H sing 1.09 N N
60 CM2 HM22 C H sing 1.09 N N
61 CM2 HM23 C H sing 1.09 N N
62 CM3 HM31 C H sing 1.09 N N
63 CM3 HM32 C H sing 1.09 N N
64 CM3 HM33 C H sing 1.09 N N
65 N1 HN1 N H sing 0.97 N N
66 C2 H21 C H sing 1.09 N N
67 C2 H22 C H sing 1.09 N N
68 C3 H31 C H sing 1.09 N N
69 C3 H32 C H sing 1.09 N N
70 C4 H41 C H sing 1.09 N N
71 C4 H42 C H sing 1.09 N N
72 C7 H7 C H sing 1.09 N N
73 C8 H8 C H sing 1.09 N N
74 C9 H9 C H sing 1.09 N N