Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : 4JY    

Bonds between two atoms of the molecule

Total Number of Bonds: 69


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C34 C35 C C doub 1.38 N Y
2 C34 C33 C C sing 1.38 N Y
3 C35 C36 C C sing 1.38 N Y
4 C33 C32 C C doub 1.38 N Y
5 C36 C31 C C doub 1.39 N Y
6 C32 C31 C C sing 1.39 N Y
7 C31 C29 C C sing 1.48 N N
8 C23 C22 C C sing 1.53 N N
9 C29 C28 C C doub 1.36 N Y
10 C29 N30 C N sing 1.35 N Y
11 C22 O21 C O sing 1.43 N N
12 C28 N27 C N sing 1.37 N Y
13 N30 C4 N C doub 1.3 N Y
14 O21 C8 O C sing 1.36 N N
15 N27 C4 N C sing 1.35 N Y
16 C4 C2 C C sing 1.51 N N
17 C9 C8 C C doub 1.39 N Y
18 C9 C3 C C sing 1.38 N Y
19 C8 C7 C C sing 1.39 N Y
20 N1 C2 N C sing 1.47 N N
21 N1 C10 N C sing 1.39 N N
22 C2 C3 C C sing 1.51 N N
23 C3 C5 C C doub 1.38 N Y
24 C7 C6 C C doub 1.39 N Y
25 C15 C10 C C doub 1.39 N Y
26 C15 C14 C C sing 1.38 N Y
27 C10 C11 C C sing 1.39 N Y
28 C5 C6 C C sing 1.39 N Y
29 C5 F20 C F sing 1.35 N N
30 C6 O17 C O sing 1.36 N N
31 C14 C13 C C doub 1.4 N Y
32 C11 C12 C C doub 1.38 N Y
33 O17 C24 O C sing 1.43 N N
34 C26 C24 C C sing 1.53 N N
35 C24 C25 C C sing 1.53 N N
36 C13 C12 C C sing 1.4 N Y
37 C13 C16 C C sing 1.48 N N
38 N19 C16 N C doub 1.3 N N
39 C16 N18 C N sing 1.38 N N
40 C15 H44 C H sing 1.08 N N
41 C22 H49 C H sing 1.09 N N
42 C22 H48 C H sing 1.09 N N
43 C23 H51 C H sing 1.09 N N
44 C23 H52 C H sing 1.09 N N
45 C23 H50 C H sing 1.09 N N
46 C24 H53 C H sing 1.09 N N
47 C11 H41 C H sing 1.08 N N
48 C12 H42 C H sing 1.08 N N
49 C34 H64 C H sing 1.08 N N
50 C33 H63 C H sing 1.08 N N
51 N1 H37 N H sing 0.97 N N
52 C2 H38 C H sing 1.09 N N
53 C7 H39 C H sing 1.08 N N
54 C9 H40 C H sing 1.08 N N
55 C14 H43 C H sing 1.08 N N
56 N18 H45 N H sing 0.97 N N
57 N19 H47 N H sing 0.97 N N
58 C25 H56 C H sing 1.09 N N
59 C25 H55 C H sing 1.09 N N
60 C25 H54 C H sing 1.09 N N
61 C26 H57 C H sing 1.09 N N
62 C26 H59 C H sing 1.09 N N
63 C26 H58 C H sing 1.09 N N
64 N27 H60 N H sing 0.97 N N
65 C28 H61 C H sing 1.08 N N
66 C32 H62 C H sing 1.08 N N
67 C35 H65 C H sing 1.08 N N
68 C36 H66 C H sing 1.08 N N
69 N18 H3 N H sing 0.97 N N