Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 52M    

Bonds between two atoms of the molecule

Total Number of Bonds: 45


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O1 C1 O C sing 1.36 N N
2 C1 C2 C C doub 1.39 N Y
3 C1 C13 C C sing 1.4 N Y
4 C2 C3 C C sing 1.39 N Y
5 C13 C12 C C doub 1.36 N Y
6 C3 O2 C O sing 1.35 N N
7 C3 C11 C C doub 1.41 N Y
8 C12 C11 C C sing 1.4 N Y
9 O2 C4 O C sing 1.35 N N
10 C11 C10 C C sing 1.47 N N
11 O5 C20 O C doub 1.21 N N
12 C4 C5 C C doub 1.38 N N
13 C4 C9 C C sing 1.42 N N
14 C10 C9 C C doub 1.41 N N
15 C10 C14 C C sing 1.47 N N
16 C5 C6 C C sing 1.4 N N
17 C9 C8 C C sing 1.41 N N
18 C20 O4 C O sing 1.35 N N
19 C20 C19 C C sing 1.48 N N
20 C14 C19 C C doub 1.41 N Y
21 C14 C15 C C sing 1.4 N Y
22 C19 C18 C C sing 1.39 N Y
23 C15 C16 C C doub 1.38 N Y
24 C6 O3 C O doub 1.23 N N
25 C6 C7 C C sing 1.41 N N
26 C8 C7 C C doub 1.36 N N
27 C18 C17 C C doub 1.39 N Y
28 C16 C17 C C sing 1.39 N Y
29 C17 N1 C N sing 1.39 N N
30 N1 C21 N C sing 1.35 N N
31 C21 O6 C O doub 1.22 N N
32 C21 S1 C S sing 1.76 N N
33 S1 H1 S H sing 1.41 N N
34 N1 H2 N H sing 0.97 N N
35 C18 H3 C H sing 1.08 N N
36 O4 H4 O H sing 0.97 N N
37 C16 H5 C H sing 1.08 N N
38 C15 H6 C H sing 1.08 N N
39 C5 H7 C H sing 1.08 N N
40 C8 H9 C H sing 1.08 N N
41 C7 H10 C H sing 1.08 N N
42 C2 H11 C H sing 1.08 N N
43 C12 H12 C H sing 1.08 N N
44 C13 H13 C H sing 1.08 N N
45 O1 H14 O H sing 0.97 N N