Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : 590    

Bonds between two atoms of the molecule

Total Number of Bonds: 71


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 OAD SBK O S doub 1.42 N N
2 OAE SBK O S doub 1.42 N N
3 SBK OAW S O sing 1.52 N N
4 SBK NAV S N sing 1.66 N N
5 OAW CAN O C sing 1.43 N N
6 OAL CAL O C sing 1.43 N N
7 NAV CAZ N C sing 1.35 N N
8 CBE CAN C C sing 1.53 N N
9 CBE CAL C C sing 1.55 N N
10 CBE OAX C O sing 1.44 N N
11 CAZ OAB C O doub 1.21 N N
12 CAZ CAJ C C sing 1.51 N N
13 CAL CAM C C sing 1.54 N N
14 OAX CBG O C sing 1.44 N N
15 CAM CBG C C sing 1.55 N N
16 CAJ CAH C C sing 1.53 N N
17 CBG N9 C N sing 1.47 N N
18 N5 N2 N N doub 1.12 N N
19 CAH CAI C C sing 1.53 N N
20 N9 C4 N C sing 1.37 N Y
21 N9 C8 N C sing 1.36 N Y
22 N3 C4 N C doub 1.33 N Y
23 N3 C2 N C sing 1.32 N Y
24 C4 C5 C C sing 1.4 N Y
25 CAI CAK C C sing 1.53 N N
26 C8 N7 C N doub 1.3 N Y
27 C2 N1 C N doub 1.32 N Y
28 C5 N7 C N sing 1.35 N Y
29 C5 C6 C C doub 1.4 N Y
30 CAK CBH C C sing 1.53 N N
31 N1 C6 N C sing 1.33 N Y
32 NAU CBI N C sing 1.47 N N
33 NAU CBA N C sing 1.34 N N
34 C6 N6 C N sing 1.38 N N
35 CBI CBH C C sing 1.54 N N
36 CBI CBF C C sing 1.53 N N
37 CBH SAY C S sing 1.84 N N
38 OAC CBA O C doub 1.22 N N
39 CBA NAT C N sing 1.34 N N
40 CBF NAT C N sing 1.47 N N
41 CBF CAO C C sing 1.54 N N
42 SAY CAO S C sing 1.84 N N
43 CBI H1 C H sing 1.09 N N
44 NAU H2 N H sing 0.97 N N
45 NAT H3 N H sing 0.97 N N
46 CBF H4 C H sing 1.09 N N
47 CAO H5 C H sing 1.09 N N
48 CAO H6 C H sing 1.09 N N
49 CBH H7 C H sing 1.09 N N
50 CAK H8 C H sing 1.09 N N
51 CAK H9 C H sing 1.09 N N
52 CAI H10 C H sing 1.09 N N
53 CAI H11 C H sing 1.09 N N
54 CAH H12 C H sing 1.09 N N
55 CAH H13 C H sing 1.09 N N
56 CAJ H14 C H sing 1.09 N N
57 CAJ H15 C H sing 1.09 N N
58 NAV H16 N H sing 0.97 N N
59 CAN H17 C H sing 1.09 N N
60 CAN H18 C H sing 1.09 N N
61 CBE H19 C H sing 1.09 N N
62 CAL H20 C H sing 1.09 N N
63 OAL H21 O H sing 0.97 N N
64 CAM H22 C H sing 1.09 N N
65 CAM N8Q C N sing 1.47 N N
66 CBG H24 C H sing 1.09 N N
67 C8 H25 C H sing 1.08 N N
68 C2 H26 C H sing 1.08 N N
69 N6 H27 N H sing 0.97 N N
70 N6 H28 N H sing 0.97 N N
71 N2 N8Q N N doub 1.12 N N