Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 5AF    

Bonds between two atoms of the molecule

Total Number of Bonds: 75


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 C5 C C sing 1.53 N N
2 C1 H2 C H sing 1.09 N N
3 C1 H4 C H sing 1.09 N N
4 C1 H3 C H sing 1.09 N N
5 C5 C8 C C sing 1.53 N N
6 C5 H6 C H sing 1.09 N N
7 C5 H7 C H sing 1.09 N N
8 C8 C9 C C sing 1.53 N N
9 C8 N17 C N sing 1.47 N N
10 C8 H16 C H sing 1.09 N N
11 C9 C10 C C sing 1.53 N N
12 C9 H15 C H sing 1.09 N N
13 C9 H14 C H sing 1.09 N N
14 C10 H11 C H sing 1.09 N N
15 C10 H13 C H sing 1.09 N N
16 C10 H12 C H sing 1.09 N N
17 N17 C19 N C sing 1.47 N N
18 N17 H18 N H sing 1.01 N N
19 C19 N20 C N sing 1.47 N N
20 C19 C23 C C sing 1.51 N N
21 C19 H19 C H sing 1.09 N N
22 N20 H21 N H sing 1.01 N N
23 N20 H22 N H sing 1.01 N N
24 C23 C28 C C doub 1.38 N Y
25 C23 C24 C C sing 1.38 N Y
26 C28 C30 C C sing 1.38 N Y
27 C28 H29 C H sing 1.08 N N
28 C30 C32 C C doub 1.4 N Y
29 C30 H31 C H sing 1.08 N N
30 C24 C26 C C doub 1.38 N Y
31 C24 H25 C H sing 1.08 N N
32 C26 C32 C C sing 1.4 N Y
33 C26 H27 C H sing 1.08 N N
34 C32 C33 C C sing 1.48 N Y
35 C33 O38 C O sing 1.35 N Y
36 C33 C34 C C doub 1.36 N Y
37 O38 C39 O C sing 1.35 N Y
38 C34 C36 C C sing 1.4 N Y
39 C34 H35 C H sing 1.08 N N
40 C36 C39 C C doub 1.36 N Y
41 C36 H37 C H sing 1.08 N N
42 C39 C40 C C sing 1.48 N Y
43 C40 C45 C C sing 1.4 N Y
44 C40 C41 C C doub 1.4 N Y
45 C45 C47 C C doub 1.38 N Y
46 C45 H46 C H sing 1.08 N N
47 C47 C49 C C sing 1.38 N Y
48 C47 H48 C H sing 1.08 N N
49 C41 C43 C C sing 1.38 N Y
50 C41 H42 C H sing 1.08 N N
51 C43 C49 C C doub 1.38 N Y
52 C43 H44 C H sing 1.08 N N
53 C49 C50 C C sing 1.51 N N
54 C50 N51 C N sing 1.47 N N
55 C50 N54 C N sing 1.47 N N
56 C50 H50 C H sing 1.09 N N
57 N51 H52 N H sing 1.01 N N
58 N51 H53 N H sing 1.01 N N
59 N54 C56 N C sing 1.47 N N
60 N54 H55 N H sing 1.01 N N
61 C56 C65 C C sing 1.53 N N
62 C56 C58 C C sing 1.53 N N
63 C56 H57 C H sing 1.09 N N
64 C65 C68 C C sing 1.53 N N
65 C65 H67 C H sing 1.09 N N
66 C65 H66 C H sing 1.09 N N
67 C68 H70 C H sing 1.09 N N
68 C68 H69 C H sing 1.09 N N
69 C68 H71 C H sing 1.09 N N
70 C58 C61 C C sing 1.53 N N
71 C58 H59 C H sing 1.09 N N
72 C58 H60 C H sing 1.09 N N
73 C61 H64 C H sing 1.09 N N
74 C61 H62 C H sing 1.09 N N
75 C61 H63 C H sing 1.09 N N