Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 5GL    

Bonds between two atoms of the molecule

Total Number of Bonds: 38


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C10 C11 C C sing 1.54 N N
2 C10 C4 C C sing 1.51 N N
3 S C5 S C sing 1.76 N N
4 C11 C12 C C sing 1.54 N N
5 C4 C5 C C sing 1.41 N N
6 C4 C3 C C doub 1.35 N N
7 C5 N1 C N doub 1.33 N N
8 C12 C3 C C sing 1.51 N N
9 C3 N C N sing 1.37 N N
10 N1 C6 N C sing 1.33 N N
11 N C6 N C sing 1.35 N N
12 N C2 N C sing 1.47 N N
13 C6 O C O doub 1.22 N N
14 C1 C2 C C sing 1.53 N N
15 C1 C C C sing 1.53 N N
16 C10 H2 C H sing 1.09 N N
17 C10 H3 C H sing 1.09 N N
18 C11 H4 C H sing 1.09 N N
19 C11 H5 C H sing 1.09 N N
20 C12 H6 C H sing 1.09 N N
21 C12 H7 C H sing 1.09 N N
22 C2 H8 C H sing 1.09 N N
23 C2 H9 C H sing 1.09 N N
24 C1 H10 C H sing 1.09 N N
25 C1 H11 C H sing 1.09 N N
26 C H12 C H sing 1.09 N N
27 C H13 C H sing 1.09 N N
28 C H14 C H sing 1.09 N N
29 S C7 S C sing 1.81 N N
30 C7 C8 C C sing 1.53 N N
31 C7 C9 C C sing 1.53 N N
32 C7 H1 C H sing 1.09 N N
33 C8 H15 C H sing 1.09 N N
34 C8 H16 C H sing 1.09 N N
35 C8 H17 C H sing 1.09 N N
36 C9 H18 C H sing 1.09 N N
37 C9 H19 C H sing 1.09 N N
38 C9 H20 C H sing 1.09 N N