Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 5KV    

Bonds between two atoms of the molecule

Total Number of Bonds: 33


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O3 C3 O C sing 1.43 N N
2 O4 C4 O C sing 1.43 N N
3 C3 C4 C C sing 1.53 N N
4 C3 C2 C C sing 1.53 N N
5 O37 S34 O S doub 1.42 N N
6 C4 C5 C C sing 1.53 N N
7 O35 S34 O S doub 1.42 N N
8 N2 S34 N S sing 1.66 N N
9 N2 C2 N C sing 1.47 N N
10 S34 O36 S O sing 1.52 N N
11 C2 C1 C C sing 1.53 N N
12 C5 C6 C C sing 1.53 N N
13 C5 O5 C O sing 1.43 N N
14 C1 O5 C O sing 1.43 N N
15 C1 O1 C O sing 1.43 N N
16 C6 O6 C O sing 1.43 N N
17 O6 S33 O S sing 1.52 N N
18 O38 S33 O S doub 1.42 N N
19 S33 O40 S O doub 1.42 N N
20 S33 O39 S O sing 1.52 N N
21 O4 HO4 O H sing 0.97 N N
22 C3 H3 C H sing 1.09 N N
23 C4 H4 C H sing 1.09 N N
24 C5 H5 C H sing 1.09 N N
25 C2 H2 C H sing 1.09 N N
26 C1 H1 C H sing 1.09 N N
27 O1 HO1 O H sing 0.97 N N
28 N2 HN21 N H sing 0.97 N N
29 O3 HO3 O H sing 0.97 N N
30 C6 H61 C H sing 1.09 N N
31 C6 H62 C H sing 1.09 N N
32 O36 H12 O H sing 0.97 N N
33 O39 H13 O H sing 0.97 N N