Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 5PK    

Bonds between two atoms of the molecule

Total Number of Bonds: 46


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 CAU CAT C C doub 1.38 N Y
2 CAU CAL C C sing 1.4 N Y
3 CAT CAS C C sing 1.38 N Y
4 CAO CAM C C doub 1.36 N Y
5 CAO NAP C N sing 1.34 N Y
6 CAL CAM C C sing 1.48 N N
7 CAL CAK C C doub 1.4 N Y
8 CAM NAN C N sing 1.37 N Y
9 NAP CAQ N C doub 1.31 N Y
10 CAS CAR C C doub 1.38 N Y
11 CAK CAR C C sing 1.38 N Y
12 CAK CAJ C C sing 1.51 N N
13 NAN CAQ N C sing 1.35 N Y
14 NAN CAJ N C sing 1.47 N N
15 CAJ CAH C C sing 1.53 N N
16 CAH CAG C C sing 1.53 N N
17 OAI CAG O C sing 1.43 N N
18 CAG CAB C C sing 1.53 N N
19 CAC CAB C C sing 1.53 N N
20 CAC CAD C C sing 1.53 N N
21 CAB CAA C C sing 1.53 N N
22 CAD CAE C C sing 1.53 N N
23 CAA CAF C C sing 1.53 N N
24 CAE CAF C C sing 1.53 N N
25 CAA H1 C H sing 1.09 N N
26 CAA H2 C H sing 1.09 N N
27 CAF H3 C H sing 1.09 N N
28 CAF H4 C H sing 1.09 N N
29 CAE H5 C H sing 1.09 N N
30 CAE H6 C H sing 1.09 N N
31 CAD H7 C H sing 1.09 N N
32 CAD H8 C H sing 1.09 N N
33 CAC H9 C H sing 1.09 N N
34 CAC H10 C H sing 1.09 N N
35 CAB H11 C H sing 1.09 N N
36 CAG H12 C H sing 1.09 N N
37 OAI H13 O H sing 0.97 N N
38 CAH H14 C H sing 1.09 N N
39 CAH H15 C H sing 1.09 N N
40 CAJ H16 C H sing 1.09 N N
41 CAR H17 C H sing 1.08 N N
42 CAS H18 C H sing 1.08 N N
43 CAT H19 C H sing 1.08 N N
44 CAU H20 C H sing 1.08 N N
45 CAQ H21 C H sing 1.08 N N
46 CAO H22 C H sing 1.08 N N