Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 5S4    

Bonds between two atoms of the molecule

Total Number of Bonds: 61


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O29 P02 O P sing 1.61 N N
2 P02 O03 P O sing 1.61 N N
3 P02 O01 P O doub 1.48 N N
4 O03 C04 O C sing 1.43 N N
5 C04 C05 C C sing 1.53 N N
6 O09 C08 O C sing 1.43 N N
7 C06 C05 C C sing 1.53 N N
8 O27 C10 O C doub 1.21 N N
9 C05 C08 C C sing 1.53 N N
10 C05 C07 C C sing 1.53 N N
11 C08 C10 C C sing 1.51 N N
12 C10 N11 C N sing 1.35 N N
13 N11 C12 N C sing 1.47 N N
14 C13 C12 C C sing 1.53 N N
15 C13 C14 C C sing 1.51 N N
16 O26 C14 O C doub 1.21 N N
17 C14 N15 C N sing 1.35 N N
18 N15 C16 N C sing 1.46 N N
19 C16 C17 C C sing 1.53 N N
20 C17 N18 C N sing 1.47 N N
21 N18 C19 N C sing 1.35 N N
22 N24 C20 N C sing 1.47 N N
23 C20 C19 C C sing 1.51 N N
24 C20 C21 C C sing 1.53 N N
25 C19 O25 C O doub 1.21 N N
26 C22 C21 C C sing 1.53 N N
27 C21 C23 C C sing 1.53 N N
28 C13 H1 C H sing 1.09 N N
29 C13 H2 C H sing 1.09 N N
30 C17 H3 C H sing 1.09 N N
31 C17 H4 C H sing 1.09 N N
32 C20 H5 C H sing 1.09 N N
33 C21 H6 C H sing 1.09 N N
34 C22 H7 C H sing 1.09 N N
35 C22 H8 C H sing 1.09 N N
36 C22 H9 C H sing 1.09 N N
37 C04 H11 C H sing 1.09 N N
38 C08 H19 C H sing 1.09 N N
39 O09 H20 O H sing 0.97 N N
40 N11 H21 N H sing 0.97 N N
41 C12 H22 C H sing 1.09 N N
42 C12 H23 C H sing 1.09 N N
43 N15 H24 N H sing 0.97 N N
44 C16 H25 C H sing 1.09 N N
45 C16 H26 C H sing 1.09 N N
46 N18 H27 N H sing 0.97 N N
47 C23 H28 C H sing 1.09 N N
48 C23 H29 C H sing 1.09 N N
49 C23 H30 C H sing 1.09 N N
50 N24 H31 N H sing 1.01 N N
51 N24 H32 N H sing 1.01 N N
52 P02 OP3 P O sing 1.61 N N
53 C04 H10 C H sing 1.09 N N
54 C06 H12 C H sing 1.09 N N
55 C06 H13 C H sing 1.09 N N
56 C06 H14 C H sing 1.09 N N
57 C07 H15 C H sing 1.09 N N
58 C07 H16 C H sing 1.09 N N
59 C07 H17 C H sing 1.09 N N
60 O29 H18 O H sing 0.97 N N
61 OP3 H33 O H sing 0.97 N N