Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : 5WE    

Bonds between two atoms of the molecule

Total Number of Bonds: 71


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O37 C30 O C doub 1.21 N N
2 C32 C31 C C sing 1.53 N N
3 C2 C3 C C doub 1.35 N Y
4 C2 N1 C N sing 1.34 N Y
5 C3 N6 C N sing 1.37 N Y
6 C30 C31 C C sing 1.51 N N
7 C30 N14 C N sing 1.35 N N
8 C10 N14 C N sing 1.47 N N
9 C10 C11 C C sing 1.54 N N
10 C10 C7 C C sing 1.51 N N
11 N14 C13 N C sing 1.47 N N
12 N1 C4 N C doub 1.32 N Y
13 N6 C7 N C sing 1.35 N Y
14 N6 C5 N C sing 1.38 N Y
15 C11 C12 C C sing 1.55 N N
16 C7 N8 C N doub 1.31 N Y
17 C13 C12 C C sing 1.55 N N
18 C4 C5 C C sing 1.41 N Y
19 C4 N15 C N sing 1.38 N N
20 C5 C9 C C doub 1.39 N Y
21 N8 C9 N C sing 1.34 N Y
22 C9 C16 C C sing 1.48 N N
23 C17 C16 C C doub 1.4 N Y
24 C17 C18 C C sing 1.37 N Y
25 C16 C21 C C sing 1.4 N Y
26 C18 C19 C C doub 1.4 N Y
27 C21 C20 C C doub 1.37 N Y
28 C20 C19 C C sing 1.4 N Y
29 C19 C22 C C sing 1.47 N N
30 C22 N23 C N sing 1.35 N N
31 C22 O24 C O doub 1.22 N N
32 N23 C25 N C sing 1.39 N N
33 C25 N29 C N doub 1.3 N Y
34 C25 S26 C S sing 1.71 N Y
35 N29 C28 N C sing 1.32 N Y
36 S26 C27 S C sing 1.76 N Y
37 C28 C27 C C doub 1.33 N Y
38 C2 H1 C H sing 1.08 N N
39 C3 H2 C H sing 1.08 N N
40 C12 H3 C H sing 1.09 N N
41 C12 H4 C H sing 1.09 N N
42 C13 H5 C H sing 1.09 N N
43 C13 H6 C H sing 1.09 N N
44 N15 H7 N H sing 0.97 N N
45 N15 H8 N H sing 0.97 N N
46 C17 H9 C H sing 1.08 N N
47 C18 H10 C H sing 1.08 N N
48 C20 H11 C H sing 1.08 N N
49 C21 H12 C H sing 1.08 N N
50 C31 H13 C H sing 1.09 N N
51 C32 H14 C H sing 1.09 N N
52 C32 H15 C H sing 1.09 N N
53 C11 H16 C H sing 1.09 N N
54 C11 H17 C H sing 1.09 N N
55 C10 H18 C H sing 1.09 N N
56 N23 H19 N H sing 0.97 N N
57 C28 H20 C H sing 1.08 N N
58 C27 H21 C H sing 1.08 N N
59 C32 C1 C C sing 1.53 N N
60 C1 N2 C N sing 1.47 N N
61 N2 C8 N C sing 1.47 N N
62 N2 C14 N C sing 1.47 N N
63 C31 H22 C H sing 1.09 N N
64 C1 H23 C H sing 1.09 N N
65 C1 H24 C H sing 1.09 N N
66 C8 H25 C H sing 1.09 N N
67 C8 H26 C H sing 1.09 N N
68 C8 H27 C H sing 1.09 N N
69 C14 H28 C H sing 1.09 N N
70 C14 H29 C H sing 1.09 N N
71 C14 H30 C H sing 1.09 N N