Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 5XH    

Bonds between two atoms of the molecule

Total Number of Bonds: 72


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 N1 C N sing 1.47 N N
2 C27 N1 C N sing 1.47 N N
3 N1 C2 N C sing 1.47 N N
4 C8 C7 C C sing 1.47 N N
5 C8 C9 C C sing 1.53 N N
6 C24 C23 C C sing 1.51 N N
7 C2 C3 C C sing 1.51 N N
8 C7 C6 C C sing 1.55 N N
9 C4 C3 C C doub 1.33 E N
10 C4 C5 C C sing 1.47 N N
11 C9 C10 C C sing 1.51 N N
12 C10 N3 C N sing 1.47 N N
13 C10 C26 C C sing 1.54 N N
14 C23 C22 C C doub 1.38 N Y
15 C23 C25 C C sing 1.39 N Y
16 C6 N2 C N sing 1.44 N N
17 C5 N2 C N sing 1.35 N N
18 C5 O2 C O doub 1.22 N N
19 N2 C26 N C sing 1.48 N N
20 C22 C21 C C sing 1.39 N Y
21 N3 C25 N C sing 1.38 N Y
22 N3 C11 N C sing 1.36 N Y
23 C25 C19 C C doub 1.4 N Y
24 C21 C20 C C doub 1.38 N Y
25 C11 N4 C N sing 1.38 N N
26 C11 N6 C N doub 1.31 N Y
27 C19 C20 C C sing 1.4 N Y
28 C19 N6 C N sing 1.36 N Y
29 C17 C16 C C sing 1.51 N N
30 N4 C12 N C sing 1.35 N N
31 C18 C16 C C doub 1.38 N Y
32 C18 C13 C C sing 1.4 N Y
33 C16 N5 C N sing 1.32 N Y
34 C12 C13 C C sing 1.48 N N
35 C12 O1 C O doub 1.22 N N
36 C13 C14 C C doub 1.4 N Y
37 N5 C15 N C doub 1.32 N Y
38 C14 C15 C C sing 1.38 N Y
39 C1 H1 C H sing 1.09 N N
40 C1 H2 C H sing 1.09 N N
41 C1 H3 C H sing 1.09 N N
42 C2 H4 C H sing 1.09 N N
43 C2 H5 C H sing 1.09 N N
44 C3 H6 C H sing 1.08 N N
45 C14 H8 C H sing 1.08 N N
46 C15 H9 C H sing 1.08 N N
47 C17 H10 C H sing 1.09 N N
48 C17 H11 C H sing 1.09 N N
49 C17 H12 C H sing 1.09 N N
50 C18 H13 C H sing 1.08 N N
51 C20 H14 C H sing 1.08 N N
52 C21 H15 C H sing 1.08 N N
53 C22 H16 C H sing 1.08 N N
54 C24 H17 C H sing 1.09 N N
55 C24 H18 C H sing 1.09 N N
56 C24 H19 C H sing 1.09 N N
57 C26 H20 C H sing 1.09 N N
58 C26 H21 C H sing 1.09 N N
59 C27 H22 C H sing 1.09 N N
60 C27 H23 C H sing 1.09 N N
61 C27 H24 C H sing 1.09 N N
62 C4 H25 C H sing 1.08 N N
63 C10 H28 C H sing 1.09 N N
64 C9 H29 C H sing 1.09 N N
65 C9 H30 C H sing 1.09 N N
66 C8 H31 C H sing 1.09 N N
67 C8 H32 C H sing 1.09 N N
68 C7 H33 C H sing 1.09 N N
69 C6 H34 C H sing 1.09 N N
70 N4 H35 N H sing 0.97 N N
71 C7 H7 C H sing 1.09 N N
72 C6 H26 C H sing 1.09 N N