Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 5YC    

Bonds between two atoms of the molecule

Total Number of Bonds: 39


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O C5 O C doub 1.22 N N
2 C8 C7 C C sing 1.51 N N
3 N3 C7 N C doub 1.29 N N
4 N3 N1 N N sing 1.39 N N
5 C5 N1 C N sing 1.36 N N
6 C5 C4 C C sing 1.4 N N
7 C7 S C S sing 1.77 N N
8 N1 C6 N C sing 1.36 N N
9 C C1 C C sing 1.53 N N
10 C4 C3 C C doub 1.38 N N
11 C6 S C S sing 1.77 N N
12 C6 N2 C N doub 1.32 N N
13 C3 N2 C N sing 1.33 N N
14 C3 C2 C C sing 1.51 N N
15 C1 N C N sing 1.46 N N
16 C2 N C N sing 1.47 N N
17 N C9 N C sing 1.4 N N
18 C9 C14 C C doub 1.39 N Y
19 C9 C10 C C sing 1.39 N Y
20 C14 C13 C C sing 1.38 N Y
21 C10 C11 C C doub 1.38 N Y
22 C13 C12 C C doub 1.38 N Y
23 C11 C12 C C sing 1.38 N Y
24 C4 H1 C H sing 1.08 N N
25 C14 H2 C H sing 1.08 N N
26 C11 H3 C H sing 1.08 N N
27 C8 H4 C H sing 1.09 N N
28 C8 H5 C H sing 1.09 N N
29 C8 H6 C H sing 1.09 N N
30 C10 H7 C H sing 1.08 N N
31 C12 H8 C H sing 1.08 N N
32 C13 H9 C H sing 1.08 N N
33 C2 H11 C H sing 1.09 N N
34 C2 H12 C H sing 1.09 N N
35 C1 H13 C H sing 1.09 N N
36 C1 H14 C H sing 1.09 N N
37 C H15 C H sing 1.09 N N
38 C H16 C H sing 1.09 N N
39 C H17 C H sing 1.09 N N