Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : 5YE    

Bonds between two atoms of the molecule

Total Number of Bonds: 45


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C10 C11 C C sing 1.54 N N
2 C10 C9 C C sing 1.54 N N
3 C11 C6 C C sing 1.53 N N
4 O C5 O C doub 1.22 N N
5 C9 C7 C C sing 1.51 N N
6 C6 C7 C C doub 1.32 N N
7 C6 N1 C N sing 1.39 N N
8 C5 N1 C N sing 1.37 N N
9 C5 C4 C C sing 1.4 N N
10 C7 S C S sing 1.77 N N
11 N1 C8 N C sing 1.36 N N
12 C4 C3 C C doub 1.38 N N
13 C C1 C C sing 1.53 N N
14 C8 S C S sing 1.77 N N
15 C8 N2 C N doub 1.32 N N
16 C3 N2 C N sing 1.33 N N
17 C3 C2 C C sing 1.51 N N
18 C1 N C N sing 1.47 N N
19 C2 N C N sing 1.46 N N
20 N C12 N C sing 1.4 N N
21 C12 C13 C C doub 1.39 N Y
22 C12 C17 C C sing 1.39 N Y
23 C13 C14 C C sing 1.38 N Y
24 C17 C16 C C doub 1.38 N Y
25 C14 C15 C C doub 1.38 N Y
26 C16 C15 C C sing 1.38 N Y
27 C15 F C F sing 1.35 N N
28 C4 H1 C H sing 1.08 N N
29 C14 H2 C H sing 1.08 N N
30 C11 H3 C H sing 1.09 N N
31 C11 H4 C H sing 1.09 N N
32 C9 H5 C H sing 1.09 N N
33 C9 H6 C H sing 1.09 N N
34 C10 H7 C H sing 1.09 N N
35 C10 H8 C H sing 1.09 N N
36 C13 H9 C H sing 1.08 N N
37 C16 H11 C H sing 1.08 N N
38 C17 H12 C H sing 1.08 N N
39 C1 H13 C H sing 1.09 N N
40 C1 H14 C H sing 1.09 N N
41 C H15 C H sing 1.09 N N
42 C H16 C H sing 1.09 N N
43 C H17 C H sing 1.09 N N
44 C2 H18 C H sing 1.09 N N
45 C2 H19 C H sing 1.09 N N